Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0453
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 239 1e-63
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063) 29 3.5
SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22) 29 4.6
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 29 4.6
SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45) 28 8.0
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 28 8.0
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 239 bits (586), Expect = 1e-63
Identities = 116/129 (89%), Positives = 122/129 (94%)
Frame = +3
Query: 39 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 218
V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5 VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64
Query: 219 PKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR 398
P+RLFEGNALLRRLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR
Sbjct: 65 PRRLFEGNALLRRLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHAR 124
Query: 399 ILIRQRHIR 425
+LIRQRHIR
Sbjct: 125 VLIRQRHIR 133
Score = 57.6 bits (133), Expect = 9e-09
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +2
Query: 569 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGG 658
RKQ+VN+PSF+VRLDS KHIDFSL SP+GG
Sbjct: 135 RKQLVNVPSFVVRLDSQKHIDFSLNSPYGG 164
>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 32.7 bits (71), Expect = 0.28
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 66 RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 224
+RP K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 57 KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109
>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1562
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = -3
Query: 577 LLADNYYQTNASYYENTNCFKTLNSTKLKFKW-SI*TKQIQAAAIRAPLLSHR 422
L+ Y +TN Y + CF L+ +K F++ ++ T++I A APL+S++
Sbjct: 1092 LVLRGYGRTNPYDYPSEICFNGLHYSKYFFRYIALLTREITQDANAAPLISYQ 1144
>SB_34026| Best HMM Match : PLDc (HMM E-Value=0.063)
Length = 499
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = -1
Query: 330 SPQSSDQAHNRVSSVFHPVLQYEPDDVEGHYLRTISWGPSPRG*GAHEQPYGYERACI*R 151
SP+ +D H VSSV LQ DD H L+ ++ PS +++ + + +
Sbjct: 219 SPEVADFFHELVSSVSDISLQLHKDDTT-HMLKDFAFHPSE----SNKTEFITKATERLK 273
Query: 150 AILHACCGDRTLR 112
++H+C G + +R
Sbjct: 274 TLVHSCSGKKAIR 286
>SB_44438| Best HMM Match : Phosphorylase (HMM E-Value=1e-22)
Length = 398
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Frame = +3
Query: 174 IRKAARELLTLEEKDPKRL-------FEGNALLRRLVRIGVLDEKQMKLDYVLGLKIEDF 332
+ K R T EKDPKR+ + G AL ++ +G+ E + Y LGL +E+
Sbjct: 100 VGKWIRTQQTYYEKDPKRVYYLSLEYYMGRALSNTMINLGIQGECD-EAAYQLGLDMEEL 158
Query: 333 LERRLQTQVFKAGLAK 380
E + GL +
Sbjct: 159 EEMEEDAGLGNGGLGR 174
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/86 (24%), Positives = 37/86 (43%)
Frame = +3
Query: 3 SSPRMVNNRLPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRK 182
SS RMV + ++ Y + + L ++ ++ E R ++E W + + + K
Sbjct: 1811 SSSRMVTRQDVVIYQDKYSKLESDYHQL-LAEKSRLESELAARVRQEAWGKQEQIYTLEK 1869
Query: 183 AARELLTLEEKDPKRLFEGNALLRRL 260
REL T E + E N L+ L
Sbjct: 1870 EVRELKTSNEGYIRSNDEKNVLISEL 1895
>SB_25478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +3
Query: 180 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKL 299
++A ELL EK+ KRL E NA L R V++ +++KL
Sbjct: 24 RSAAELLDKSEKERKRLSEKNAQLTINERDLVMELERLKL 63
>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
Length = 454
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +3
Query: 81 KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 224
K L Q+ +G+YG KR+ V AARE+L +E PK
Sbjct: 2 KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 258 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 404
L++I D+K M+ +Y+LGL +E +R +++ + K H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,050,295
Number of Sequences: 59808
Number of extensions: 422453
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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