Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0452
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161... 48 5e-06
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386... 47 1e-05
03_02_0737 + 10820728-10821096,10821320-10821532,10821631-108217... 47 2e-05
05_03_0270 - 11337212-11337418,11337448-11337606,11337696-113377... 40 0.003
01_06_1599 - 38539460-38539480,38539973-38540054,38540185-385402... 39 0.004
07_01_0239 + 1744353-1746365 30 2.0
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.7
02_02_0677 + 12859101-12859413,12862450-12862817 29 2.7
10_08_0804 + 20700414-20700723,20700813-20700924,20701380-207014... 28 6.2
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 28 6.2
06_03_1330 - 29375494-29376912 28 6.2
02_04_0266 - 21415912-21418563 28 6.2
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 28 8.3
>07_03_0802 -
21614891-21615195,21615637-21615823,21615939-21616154,
21616669-21616872,21617336-21617569,21617670-21617763,
21618844-21618890,21619293-21619309,21620183-21620459
Length = 526
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/63 (41%), Positives = 32/63 (50%)
Frame = +1
Query: 391 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 570
+I E +L F R G GG VNK V + HIPTG ++C R Q N+ KA L
Sbjct: 383 EIPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCTEERSQLANKIKALSRLK 442
Query: 571 EKL 579
KL
Sbjct: 443 AKL 445
>11_06_0607 +
25437897-25438046,25438180-25438236,25438522-25438602,
25438720-25438777,25438888-25438991,25439064-25439115,
25439232-25439281,25440279-25440443,25440531-25440603,
25440714-25440846,25441146-25441203,25441411-25441458,
25441593-25441676,25441803-25441868,25442419-25442502
Length = 420
Score = 47.2 bits (107), Expect = 1e-05
Identities = 31/80 (38%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 394 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIE 573
I+ ++ K R G GG VNK V L H PTG I C R Q NR++A +LL
Sbjct: 247 IDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIRIFCTEERSQLQNRERAFQLLRA 306
Query: 574 KLDD--MINGPESVSAHRKL 627
KL + + ES+ RKL
Sbjct: 307 KLYEIKLREQQESIRNQRKL 326
>03_02_0737 +
10820728-10821096,10821320-10821532,10821631-10821732,
10821755-10821793,10821830-10821967,10822182-10822486,
10822784-10822937,10823279-10823404
Length = 481
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = +1
Query: 391 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 570
+I + +L + R GPGG N + V + HIPTG C R Q N+ A +L
Sbjct: 344 QIKDSDLRIERFRSGGPGGQHANCTESAVRIVHIPTGITATCQNERSQHMNKASAMAVLQ 403
Query: 571 EKLDDM 588
+LD +
Sbjct: 404 SRLDQL 409
>05_03_0270 -
11337212-11337418,11337448-11337606,11337696-11337770,
11337926-11338004,11338096-11338144,11338243-11338426,
11338511-11338609,11338742-11338840
Length = 316
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 427 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQ 534
R G GG +VN + V +TH+PTGTV+ R Q
Sbjct: 264 RSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQ 299
>01_06_1599 -
38539460-38539480,38539973-38540054,38540185-38540255,
38540359-38540489,38550539-38550614,38551229-38551588
Length = 246
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +1
Query: 394 INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKA 555
+ +CE+ + SGPGG NK + V L H PTG + + R Q NR A
Sbjct: 83 MGQCEMGT--FKASGPGGQHRNKRESAVRLRHRPTGIIAQAVEDRSQHMNRASA 134
>07_01_0239 + 1744353-1746365
Length = 670
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 367 TIDYSKVPKINECELSEKFVRGSGPGGS 450
++ YSK+PKIN +L + G+G G S
Sbjct: 256 SLQYSKLPKINTSDLPDHVTYGTGRGSS 283
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = +3
Query: 111 KEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQKGQALLQRGS 290
KEVL ++RNLL K KL DY+ KI + +T + + S Y + QR S
Sbjct: 128 KEVLEIHRNLL--EKVHKLKIQDYYELP-KISASERKKITSIIEDSSIYNEQDPFGQRDS 184
Query: 291 VV*HV 305
H+
Sbjct: 185 SFYHL 189
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 568 IEKLDDMINGPESVSAHRKLIEEKKYKRN-ATKK--QKISKLKDEWKK 702
I +L + E+V+ H K++EE K+ R+ TKK ++I L ++ KK
Sbjct: 121 IRELRGLKKNVEAVTKHNKMLEEAKHGRSEETKKYQEEIGALNEDMKK 168
>10_08_0804 +
20700414-20700723,20700813-20700924,20701380-20701467,
20702530-20702910
Length = 296
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 289 QLCDMFFLTSKYFRNFSPRLAAAFKHTIDYSKVPKINECELSEKFVR-GSGPGGSAVNKN 465
QL F + + F NF+ LA + ++I+Y + EL R G+GPG +
Sbjct: 138 QLTGFFIINTYMFLNFATSLAVYYPYSINYES----HAIELPSSQERAGAGPGRRPDLVS 193
Query: 466 SNCVV 480
+N VV
Sbjct: 194 TNAVV 198
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 529 CQDDNRKKARELLIEKLDDMINGPESVSAHRK 624
C D+ R++ L +LD ING S +HR+
Sbjct: 2093 CSDERRREMSTLQASELDLSINGRSSSHSHRR 2124
>06_03_1330 - 29375494-29376912
Length = 472
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 271 PCCREGQLCDMFFLTSKYFRNFSP 342
PCC G+ C M SKY SP
Sbjct: 306 PCCCSGRACSMSIPCSKYLVELSP 329
>02_04_0266 - 21415912-21418563
Length = 883
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 496 TGTVIKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEK 639
TG +KCH +RC+D RK + L + P S S+ + L+ +
Sbjct: 796 TGGHLKCHITRCEDVPRKFSPWKLSMAPCENFATPPSASSGKNLLSSR 843
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 547 KKARELLIEKLDDMINGPESVSAHR-KLIEEKKYKRNATKKQKISKLKDE 693
K A L +KL ++ E+ + +LIE K+ K+ K+Q++ LKDE
Sbjct: 201 KAAEALRCQKL--LVEEEEAAQKRQAELIERKRMKKLRQKEQRLKDLKDE 248
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,980,628
Number of Sequences: 37544
Number of extensions: 342727
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -