Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0452
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061) 58 9e-09
SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39) 47 2e-05
SB_47771| Best HMM Match : Annexin (HMM E-Value=0) 30 2.1
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13) 29 3.6
SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48) 29 3.6
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33) 29 3.6
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_35009| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4) 28 6.4
SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40) 28 6.4
SB_30445| Best HMM Match : ArfGap (HMM E-Value=4.2) 28 6.4
SB_1472| Best HMM Match : E-MAP-115 (HMM E-Value=4.4) 28 6.4
SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_41419| Best HMM Match : E-MAP-115 (HMM E-Value=1.3) 28 6.4
SB_40948| Best HMM Match : DUF947 (HMM E-Value=1.7) 28 6.4
SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01) 28 6.4
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 28 6.4
SB_6515| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4) 28 6.4
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_8863| Best HMM Match : DAO (HMM E-Value=0.04) 28 8.4
>SB_35775| Best HMM Match : RF-1 (HMM E-Value=0.0061)
Length = 243
Score = 57.6 bits (133), Expect = 9e-09
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +1
Query: 376 YSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIK 513
Y V K+ E ++ E+FV+G G GG VNK +NCV L H+PTG VIK
Sbjct: 81 YYHVVKLQEEDIEERFVKGWGKGGQKVNKTNNCVELRHVPTGIVIK 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 508 IKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQK 672
++CH +R NR ARELL+ +LD + NG +S +A ++ + KK K +++K
Sbjct: 173 LQCHQTRSLTRNRSIARELLLNQLDQLYNGKDSKAA-IQIAKIKKRKATYARRRK 226
>SB_44483| Best HMM Match : RF-1 (HMM E-Value=9e-39)
Length = 309
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +1
Query: 427 RGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLIEKLDDM 588
R SG GG VN + V +THIP+G V+ R Q N+ KA ++L +L D+
Sbjct: 240 RASGAGGQHVNTTDSAVRITHIPSGMVVSSQEERSQFKNKAKAMQVLRARLYDL 293
>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
Length = 529
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLKDEWKK 702
S Q+ + K +E + EK DD+ +++ K + NA+ + K+ KL DE+ K
Sbjct: 28 SDSQNKEKDKEKEKVEEKDDDITKLQKAIEKSDKKTATEVIVCNASDEGKLKKLSDEYNK 87
>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
Length = 649
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +1
Query: 487 HIPTGTVIKCHTSRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKK 666
H+P VIK R + D + L I D + S + HR+L+ E+ K T+K
Sbjct: 17 HVPDYDVIKLDNQRLRRDPPRNLLRLPIFGKDMELQLEPSDAIHRELMVERLRKDGMTEK 76
Query: 667 Q 669
Q
Sbjct: 77 Q 77
>SB_33521| Best HMM Match : Utp14 (HMM E-Value=0.48)
Length = 947
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 81 STNKIMNITRKEVLRLYRNLLMYSKSLKLTDPDYFRRSIKIEFKNNQNLTDLEKISFAYQ 260
S KI+++ RK+ L +Y+ + +K P+ IKI N+NL D K S A
Sbjct: 566 SNTKILDV-RKKTLDVYKEIPDVNKKNPKKPPNILDEHIKIPNVINKNLYDHRKSSDALN 624
Query: 261 K 263
K
Sbjct: 625 K 625
>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
Length = 567
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 337 SPRLAAAFKHTIDYSKVPK-INECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIK 513
SP + +H+ D VPK INE EL E FV+ S ++++ + G++
Sbjct: 171 SPTIDTRRRHSTDMVSVPKPINE-ELIEDFVKKSPGQRRKTSRDNTDGKINRRNMGSLYS 229
Query: 514 CHTSRCQDDNRKKARE 561
+R + +N KKA +
Sbjct: 230 PRAARKKLENTKKAAD 245
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +1
Query: 619 RKLIEEKKYKRNATKKQKISK 681
RKLIE+ KYKRN + K KISK
Sbjct: 147 RKLIEKTKYKRNNSTK-KISK 166
>SB_35009| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4)
Length = 271
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_30861| Best HMM Match : Peptidase_A17 (HMM E-Value=2.1e-40)
Length = 1740
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_30445| Best HMM Match : ArfGap (HMM E-Value=4.2)
Length = 183
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_1472| Best HMM Match : E-MAP-115 (HMM E-Value=4.4)
Length = 349
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_1216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1834
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_41419| Best HMM Match : E-MAP-115 (HMM E-Value=1.3)
Length = 325
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 97 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 149
>SB_40948| Best HMM Match : DUF947 (HMM E-Value=1.7)
Length = 293
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_32040| Best HMM Match : zf-CCHC (HMM E-Value=0.01)
Length = 471
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 28.3 bits (60), Expect = 6.4
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Frame = +1
Query: 370 IDYSKVPKINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRK 549
+D+ + PK+ E ++ + G +A+ N V GT +DDN
Sbjct: 291 VDFLRAPKLKNTEPPKQKLNGD----AAIVING--VNSDESNPGTPEVVDEDELEDDNEL 344
Query: 550 KARELLIEKLDDMINGPESVSAHRKLIE--EKKYKRNATKKQK 672
+A+E LIE+L + E+ K ++ + RN +K QK
Sbjct: 345 QAKEQLIEELRQELRNEEAKLMLLKRLQAAQNDTSRNTSKYQK 387
>SB_6515| Best HMM Match : Phe_tRNA-synt_N (HMM E-Value=4)
Length = 242
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1515
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 523 SRCQDDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLK 687
SR +RK ++ ++KL ++ E ++ HR +E KK + +K + KLK
Sbjct: 113 SRLSSRSRKLREKIEMKKL--LLQQEEEIAQHRMDLERKKIELEYEQKARACKLK 165
>SB_8863| Best HMM Match : DAO (HMM E-Value=0.04)
Length = 485
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 591 DHIIQFFN*QFPGFLPII 538
D ++ FFN +FP F+P+I
Sbjct: 466 DDVLNFFNKEFPDFIPLI 483
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,329,480
Number of Sequences: 59808
Number of extensions: 409593
Number of successful extensions: 1155
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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