Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0452
(702 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93390-2|CAE17950.1| 125|Caenorhabditis elegans Hypothetical pr... 69 3e-12
AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 36 0.021
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 36 0.021
AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical... 33 0.20
AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical... 29 2.4
U00047-10|AAA50686.1| 471|Caenorhabditis elegans Hypothetical p... 28 5.6
L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical pr... 28 7.4
L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical pr... 28 7.4
L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical pr... 28 7.4
L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical pr... 28 7.4
U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical pr... 27 9.8
U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical pr... 27 9.8
>Z93390-2|CAE17950.1| 125|Caenorhabditis elegans Hypothetical
protein T23B5.4 protein.
Length = 125
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/103 (34%), Positives = 54/103 (52%)
Frame = +1
Query: 391 KINECELSEKFVRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDNRKKARELLI 570
K+ + +K++ G GPGG VN N V LTH+PTGTV+K H SR N A E +
Sbjct: 18 KLKNYKFPDKYISGWGPGGQKVNTAQNAVQLTHLPTGTVLKVHESRLLPKNIDIAFERMK 77
Query: 571 EKLDDMINGPESVSAHRKLIEEKKYKRNATKKQKISKLKDEWK 699
LD ING K ++ K +++ ++ + K K+ +K
Sbjct: 78 FVLDRQINGENCYEEQLKRLQIAKEEKSNKRRVQARKEKESYK 120
>AF039041-6|AAB94190.1| 389|Caenorhabditis elegans Hypothetical
protein W03F8.3 protein.
Length = 389
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +1
Query: 424 VRGSGPGGSAVNKNSNCVVLTHIPTGTVIKCHTSRCQDDN-----RKKARELLIEKLDDM 588
+R SGPGG VNK S V +TH TG + C R Q N ++ A L+ +++D M
Sbjct: 251 MRASGPGGQNVNKRSTAVRMTHKETGIAVHCMDERFQHLNIQIAYKRLAAILMQKQVDAM 310
Query: 589 INGPESVSAHRKL 627
+ E + + RKL
Sbjct: 311 L---EKIVSKRKL 320
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 36.3 bits (80), Expect = 0.021
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +1
Query: 373 DYSKVPKINECELSEKFVRGSGPGGS-----AVNKNSNCVVLTHIPTGTVIKCHTSRCQD 537
D S+ IN+ E+SEK GSG G K+S +T + G +K ++ Q
Sbjct: 188 DESEDDFINDEEISEK---GSGKGSEKEESEGSGKDSETEEVT-MKQGQSLKAAMAKAQK 243
Query: 538 DNRKKAR--ELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQK 672
+ +KKA E E DDM + + IEE++ KR TK QK
Sbjct: 244 EQKKKAESDEDWEEDEDDMNADGDETPSDDSDIEERRAKRGETKNQK 290
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 36.3 bits (80), Expect = 0.021
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +1
Query: 373 DYSKVPKINECELSEKFVRGSGPGGS-----AVNKNSNCVVLTHIPTGTVIKCHTSRCQD 537
D S+ IN+ E+SEK GSG G K+S +T + G +K ++ Q
Sbjct: 188 DESEDDFINDEEISEK---GSGKGSEKEESEGSGKDSETEEVT-MKQGQSLKAAMAKAQK 243
Query: 538 DNRKKAR--ELLIEKLDDMINGPESVSAHRKLIEEKKYKRNATKKQK 672
+ +KKA E E DDM + + IEE++ KR TK QK
Sbjct: 244 EQKKKAESDEDWEEDEDDMNADGDETPSDDSDIEERRAKRGETKNQK 290
>AL033514-39|CAA22095.2| 401|Caenorhabditis elegans Hypothetical
protein Y75B8A.5 protein.
Length = 401
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Frame = +3
Query: 129 YRNLLMYSKSLKLTDPDYFRRSIK---IEFKNNQNLTDLEKISF 251
Y +L++ + S++ + + FR+ K IEF+NN NL +EK++F
Sbjct: 68 YESLVIRNSSVRTIEKNSFRKMEKLMQIEFENNPNLGTIEKLAF 111
>AL032637-17|CAD60427.1| 294|Caenorhabditis elegans Hypothetical
protein Y43F8C.19 protein.
Length = 294
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 683 NLDIFCFFVAFRLYFFSSISFLCADTLS 600
++ FCF V+F LYF S + L TLS
Sbjct: 187 SISTFCFLVSFTLYFTSILYILKTKTLS 214
>U00047-10|AAA50686.1| 471|Caenorhabditis elegans Hypothetical
protein ZK418.2a protein.
Length = 471
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/76 (19%), Positives = 33/76 (43%)
Frame = +1
Query: 187 GAQLKSNSKIIKT*LIWRKLASRIRKVRPCCREGQLCDMFFLTSKYFRNFSPRLAAAFKH 366
G Q++SN +++ L+ + V+ C +EG LC L + + +
Sbjct: 106 GQQIRSNCCVVQHNLVMHSFVYSLAVVKDCKQEGFLCKFSVLPVSHTYRYPIEMKKGGVP 165
Query: 367 TIDYSKVPKINECELS 414
+VP++N+ + +
Sbjct: 166 VTFKPEVPELNDVKFT 181
>L23646-9|AAM48529.1| 379|Caenorhabditis elegans Hypothetical
protein F44E2.7b protein.
Length = 379
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +1
Query: 535 DDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKK--------YKRNATKKQKISKLKD 690
+D + K R + +E+ + + HRKL+EE++ KR A +K+K +KD
Sbjct: 20 EDEKPKRRRIDVEQSRRSVAA--AAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKD 77
Query: 691 EWKK 702
E K+
Sbjct: 78 EEKR 81
>L23646-8|AAM48530.1| 411|Caenorhabditis elegans Hypothetical
protein F44E2.7c protein.
Length = 411
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +1
Query: 535 DDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKK--------YKRNATKKQKISKLKD 690
+D + K R + +E+ + + HRKL+EE++ KR A +K+K +KD
Sbjct: 52 EDEKPKRRRIDVEQSRRSVAA--AAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKD 109
Query: 691 EWKK 702
E K+
Sbjct: 110 EEKR 113
>L23646-7|AAA28038.3| 471|Caenorhabditis elegans Hypothetical
protein F44E2.7a protein.
Length = 471
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +1
Query: 535 DDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKK--------YKRNATKKQKISKLKD 690
+D + K R + +E+ + + HRKL+EE++ KR A +K+K +KD
Sbjct: 112 EDEKPKRRRIDVEQSRRSVAA--AAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKD 169
Query: 691 EWKK 702
E K+
Sbjct: 170 EEKR 173
>L23646-6|AAU87821.1| 469|Caenorhabditis elegans Hypothetical
protein F44E2.7d protein.
Length = 469
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Frame = +1
Query: 535 DDNRKKARELLIEKLDDMINGPESVSAHRKLIEEKK--------YKRNATKKQKISKLKD 690
+D + K R + +E+ + + HRKL+EE++ KR A +K+K +KD
Sbjct: 110 EDEKPKRRRIDVEQSRRSVAA--AAEKHRKLLEEQRRKAEAEYERKRKADEKKKEKAIKD 167
Query: 691 EWKK 702
E K+
Sbjct: 168 EEKR 171
>U42436-3|AAL02471.1| 498|Caenorhabditis elegans Hypothetical
protein C49H3.6b protein.
Length = 498
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 544 RKKARELLIEKLDDMIN-GPESVSAHRKLIEEKKYKRNATKKQKISKLKDE 693
R KA +++++ +D GP S + R+LIEE K + + ++ S K +
Sbjct: 237 RVKAEQIMLQNQNDPTKPGPSSALSERELIEELKKEVTFLRAERESLTKTQ 287
>U42436-2|AAL02470.2| 552|Caenorhabditis elegans Hypothetical
protein C49H3.6a protein.
Length = 552
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 544 RKKARELLIEKLDDMIN-GPESVSAHRKLIEEKKYKRNATKKQKISKLKDE 693
R KA +++++ +D GP S + R+LIEE K + + ++ S K +
Sbjct: 237 RVKAEQIMLQNQNDPTKPGPSSALSERELIEELKKEVTFLRAERESLTKTQ 287
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,627,507
Number of Sequences: 27780
Number of extensions: 329040
Number of successful extensions: 1057
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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