Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0451
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    84   2e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    83   3e-17
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    61   1e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    43   4e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.025
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   3.7  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          26   4.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    26   6.5  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    25   8.6  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    25   8.6  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    25   8.6  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    25   8.6  

>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 39/92 (42%), Positives = 56/92 (60%)
 Frame = +2

Query: 113 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 292
           F+++AIS + V VFSKS+CP+CK AK+   K   P K  EL++ ++G+ IQ  L + T  
Sbjct: 8   FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67

Query: 293 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 388
            TVP +F     +GG SD+  L  SG L  M+
Sbjct: 68  STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 83.4 bits (197), Expect = 3e-17
 Identities = 37/94 (39%), Positives = 61/94 (64%)
 Frame = +2

Query: 104 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 283
           ++ F+  A++ + VVVF+KSYCPYC   + V    K   +V +++  ++G+ IQ  L + 
Sbjct: 4   VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63

Query: 284 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 385
           TG RTVP +FI+   VGG SD +AL++ G+L+ +
Sbjct: 64  TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
 Frame = +2

Query: 122 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 292
           E   ++ V++FS+  CPY   AK +     ++  P  V+E+ + +    ++D L+ ++  
Sbjct: 61  EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120

Query: 293 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 388
            T+P +F+ G+ +GG   V+ALY+  KL+  L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 26/105 (24%), Positives = 57/105 (54%), Gaps = 7/105 (6%)
 Frame = +2

Query: 95  SVDIQQFIKEAISKDKVVVFSKS-----YCPYCKLAKDVF--EKVKQPIKVIELNERDDG 253
           S   +Q +++A+ +D +V+F K       C +   A  +   E V    K++  N   + 
Sbjct: 22  STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASD-KLVTYNVLSN- 79

Query: 254 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 388
           + +++ + + + + T+PQ++ING  VGG   + ++++SG+L  +L
Sbjct: 80  DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 254 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 388
           ++++  L   + + T PQ++I G  VGG   V  + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 482 NLKRK*HFICTPKYKFKYANNNKTI 408
           N K   HF+C    KF+  NN K++
Sbjct: 57  NSKANNHFLCNSPLKFEIFNNEKSV 81


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 159 NLTVLTAS*QKMFLRK*SNQLKL--LS*MNVMMETPFKIILHN*LVSELYLK 308
           N T+ + S  K F R+  N + +  LS  N  +ETPF  + H+ +VSE +++
Sbjct: 36  NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 246 MMETPFKIILHN*LVSELYLKSL*MATVWEVALMLKH 356
           M  T F+ +L + + SE+YLKSL    + ++++   H
Sbjct: 626 MFRTIFREVLLDGIASEVYLKSLKKHAISQISVRAHH 662


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 229
           D +++ SKS   + K  KDV +K+K    +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 229
           D +++ SKS   + K  KDV +K+K    +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 137 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 229
           D +++ SKS   + K  KDV +K+K    +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +2

Query: 95  SVDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQ------PIKVIELNERDDGN 256
           S + ++F+K       +VVF   +C YCK     ++K+        P+  ++ +   D N
Sbjct: 38  SKNFRKFVKA--KGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDA--DQN 93

Query: 257 TIQDNLAQLTGFRTVPQVF 313
               +  Q+ GF T+  V+
Sbjct: 94  RAVCSQYQVQGFPTIKLVY 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,042,414
Number of Sequences: 5004
Number of extensions: 63424
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)