Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0451
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             87   2e-17
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           82   5e-16
SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   4e-04
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   4e-04
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       42   4e-04
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          40   0.002
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.015
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                31   0.75 
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          31   1.3  
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)                       30   2.3  
SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 41/111 (36%), Positives = 67/111 (60%)
 Frame = +2

Query: 59  SGKITRSSKMAGSVDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELN 238
           S +   +  MA    IQ+ I+++I+ + V++FSKS+CP+CK  K +FE +      +EL+
Sbjct: 551 SDRSPEAKVMAPVPQIQRLIEDSINNNAVMIFSKSFCPFCKKVKAIFESINVQYTAMELD 610

Query: 239 ERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPMLI 391
             D+G  IQ+ L + +G +TVP V+I GN VGG   +  L E  K+  ++I
Sbjct: 611 LVDNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDIITKLQEENKILGLII 661


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +2

Query: 113 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVK-QPIKVIELNERDDGNTIQDNLAQLTG 289
           F++     + +VVFSK+ C +  +AK +   V    + V EL +R+DG+ IQD L +LTG
Sbjct: 9   FVRSVTRSNNIVVFSKTACSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTG 68

Query: 290 FRTVPQVFINGNCVGGGSDVKALYESGKLEPML 388
             TVP VF+ G  +GGG +   LY+SGKL+ +L
Sbjct: 69  RGTVPNVFVKGQSIGGGMETAELYQSGKLKQLL 101


>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +2

Query: 116 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 283
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 284 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 376
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +2

Query: 116 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 283
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 284 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 376
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +2

Query: 134 KDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVF 313
           K +V +FS + CP+C  AK      +  ++ +++N        Q+ + + +G RTVPQ+F
Sbjct: 2   KGRVTIFSITGCPFCVRAKTKLRD-ELNLEFVDINLDRHPERRQEAMER-SGKRTVPQIF 59

Query: 314 INGNCVGGGSDVKALYESGKLEPML 388
            N   VGG  D+  L  + K+E ++
Sbjct: 60  FNNIHVGGFDDLDKL-SADKMEELI 83


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +2

Query: 176 CKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKA 355
           C+  K +F+ +   I   ++    +     D   Q      VPQVF+NG C+GG  ++  
Sbjct: 239 CRFVKKLFDNLNVEIDERDIFIHKEHQVELDRRLQEEK-APVPQVFVNGICLGGSKELLH 297

Query: 356 LYESGKLEPMLIG 394
           L E+G+L+ +L G
Sbjct: 298 LNETGELKELLSG 310


>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +2

Query: 299 VPQVFINGNCVGGGSDVKALYESGKLEPML 388
           VPQV ING  +GGG++ + L  SGKL  ML
Sbjct: 1   VPQVHINGKFIGGGTETEDLERSGKLLEML 30


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 NERDDGNTIQDNLAQLTGFRTVPQVFING 322
           +E DDG          TGF+T PQV +NG
Sbjct: 490 SENDDGRKAWKRFHDRTGFQTTPQVVVNG 518


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +2

Query: 140 KVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFIN 319
           +V + +K  C +C  AK   +   + ++  E+    +G +   +L  ++G  T PQVF++
Sbjct: 172 RVTLITKPGCSHCTRAKVALQN--KGLRYEEIVLGVNGVSFS-SLNAISGQGTTPQVFVD 228

Query: 320 GNCVGGGSDVKA 355
           G  VG   D++A
Sbjct: 229 GVHVGTADDLEA 240


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +2

Query: 173 YCKLAKDVFEKVKQPIKVIELNERDDGNT---IQDNLAQLTGFRT 298
           Y KLA D+ E ++  IK+I+L ER+  NT   +Q  + +   +RT
Sbjct: 236 YEKLASDLLEWIE--IKIIQLGEREFANTLLGVQQQMLEFNQYRT 278


>SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)
          Length = 361

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 137 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTV 301
           DK     + Y   C+  +  F K   P+K+  LN+  +G  I D +  L G+  V
Sbjct: 80  DKTKAVKEEYKRQCEANEQFFVKEAAPVKMAPLNDPSEGKIILD-IKGLKGYELV 133


>SB_15291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +2

Query: 50  GSQSGKITRSSKMAGSVDIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 229
           G++ G   + +     V  +Q ++E   +D +V  ++ YC  CK      E  K+ +K +
Sbjct: 52  GNRRGSRNKPTYYEPKVSAKQRVEEFKGEDLIVRNNEVYCAACKEVSKKHELNKEKLKKL 111

Query: 230 ELNERD 247
              E D
Sbjct: 112 GKREED 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,529,364
Number of Sequences: 59808
Number of extensions: 419759
Number of successful extensions: 962
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)