Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0450
         (550 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    23   2.3  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   2.3  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   3.1  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    21   5.4  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    21   9.4  

>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 482 WPGRPATRIPR 450
           WP RP  ++PR
Sbjct: 282 WPARPVNQVPR 292


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 396 LWLMGAKSKWLRXRRTSGPG 455
           +W    + KW +  +T G G
Sbjct: 288 IWFQNRRMKWKKENKTKGEG 307


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +3

Query: 396 LWLMGAKSKWLRXRRTSGPG 455
           +W    + KW +  +T G G
Sbjct: 290 IWFQNRRMKWKKENKTKGEG 309


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -3

Query: 482 WPGRPATRIP 453
           WPGRP  R P
Sbjct: 37  WPGRPPKRAP 46


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/40 (27%), Positives = 13/40 (32%)
 Frame = +1

Query: 253 CTGTRCPCSRPRSLSGFAPPTWRSSTGLAPASRRCCSGPS 372
           C  T CP    RS    +    +      P     C GPS
Sbjct: 21  CLITNCPRGGKRSKFAISENAVKPCVSCGPGQSGQCFGPS 60


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 125 NSARLFSFYG-FFEPMFAVDLNPVGAQRRYR 36
           +S    + YG F++P + +D N V     YR
Sbjct: 119 HSGAFMTGYGSFYQPDYFIDKNIVFVNLNYR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,615
Number of Sequences: 336
Number of extensions: 2521
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)