Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0450
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 138 5e-34
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 33 0.037
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 31 0.085
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 30 0.20
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 28 0.79
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 27 1.4
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 27 2.4
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces... 26 4.2
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 25 5.6
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 5.6
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 25 7.3
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 25 7.3
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 25 9.7
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 9.7
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 25 9.7
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 138 bits (334), Expect = 5e-34
Identities = 61/140 (43%), Positives = 91/140 (65%)
Frame = +3
Query: 3 NTHMVEKIIDRAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPED 182
N VEKI+ R ++ L A G + R+ W EA + E GAV T QAII +G G++ ED
Sbjct: 449 NVSRVEKIMARGVSELQATGGMLQRDQWLSEAEKCETEGAVITAQAIINTCLGVGLDEED 508
Query: 183 QKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQ 362
Q TW++DA++ +CARAV+ ++L V+P + +WLRA LEK +GT S+ ++L+
Sbjct: 509 QFDTWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILE 568
Query: 363 RAVAHCPKSEVLWLMGAKSK 422
+AV CPK+E+LWL+ AK +
Sbjct: 569 KAVESCPKAEILWLLYAKER 588
Score = 39.1 bits (87), Expect = 4e-04
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 470 AFQANPNSEEIWLAAVKLESENKEYDR 550
AF+ N NSEEIWLAAV++E N E +R
Sbjct: 604 AFEYNSNSEEIWLAAVRIEFVNNENER 630
Score = 38.3 bits (85), Expect = 7e-04
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 2/125 (1%)
Frame = +3
Query: 60 GVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIE--PEDQKHTWMEDAEACATEGA 233
GV ++ E F ++ +S C RAV + P+ +K W+ E G
Sbjct: 501 GVGLDEEDQFDTWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEK-LWLRAVELEKLYGT 559
Query: 234 FECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGA 413
E ++ A+ P + +WL A K A +L RA + SE +WL
Sbjct: 560 TESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAV 619
Query: 414 KSKWL 428
+ +++
Sbjct: 620 RIEFV 624
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 243 ARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAKSK 422
AR V+ A P + +WL +E + G + + L +A+ CP S +LW ++
Sbjct: 731 ARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLW---TEAI 787
Query: 423 WLRXR 437
WL R
Sbjct: 788 WLEPR 792
Score = 30.7 bits (66), Expect = 0.15
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Frame = +3
Query: 135 QAIIRA-VIGHGIEPEDQKHT--WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLR 305
Q++IRA V+ + ++ K+ W+E + G RA AL PS +W
Sbjct: 726 QSVIRARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKALQECPSSGLLWTE 785
Query: 306 AAYLE--KQHGTRASLETLLQRAVAH--CPKSEVLWL 404
A +LE Q TRA+ AH C + +LWL
Sbjct: 786 AIWLEPRAQRKTRATDALRKCEGNAHLLCTIARMLWL 822
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 422 VASXATYQRPGVSWSLAFQANPNSEEIWLAAVKLESENKEYDR 550
+A TY+ + A Q S E+W+AA +LE + R
Sbjct: 410 LARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQGNVSR 452
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 288 KSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAK 416
+ +WL A L A + ++ AV PKS LWL K
Sbjct: 312 EDVWLEAIRLHPA----AEAKVIIANAVKKLPKSVTLWLEAEK 350
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 470 AFQANPNSEEIWLAAVKLESE 532
A + NP S +W AV LE E
Sbjct: 365 ALEFNPTSVSLWKEAVNLEEE 385
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.037
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
WM + + F AR+V+ AL V + +WL+ E ++ L RAV
Sbjct: 73 WMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVT 132
Query: 375 HCPKSEVLW 401
P+ + LW
Sbjct: 133 QLPRVDKLW 141
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/70 (20%), Positives = 28/70 (40%)
Frame = +3
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
W++ E AR ++ A++ P +W + Y+E+ G + +R +
Sbjct: 107 WLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLK 166
Query: 375 HCPKSEVLWL 404
P E W+
Sbjct: 167 WEP-DENCWM 175
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 31.5 bits (68), Expect = 0.085
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +3
Query: 138 AIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYL 317
A+++ I+P+ Q W A + + Y AL++ P+ +S+W AAYL
Sbjct: 61 ALLKCGYASSIDPKSQ-FCWHALAIVYRETKDYNNSLKCYQNALAISPNNESLWYDAAYL 119
Query: 318 EKQHG 332
+ Q G
Sbjct: 120 QAQLG 124
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 30.3 bits (65), Expect = 0.20
Identities = 13/46 (28%), Positives = 17/46 (36%)
Frame = +3
Query: 177 EDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAY 314
E W C ECA A + ++S+ P WL AY
Sbjct: 961 ERSSGVWANYGALCIQNHDVECANAAFTRSISIDPDNSQAWLGKAY 1006
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 285 KKSIWLRAAYLEKQHGTRASLETLLQRAVAHC 380
K ++W+ LE +GT SL+ + + A A+C
Sbjct: 1478 KLNVWMALLNLEVAYGTEDSLKEVFKEACAYC 1509
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 27.5 bits (58), Expect = 1.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 324 QHGTRASLETLLQRAVAHCPKSEVLWLMGAKSKW 425
Q+ + +++T+++RA+A P E+ W KW
Sbjct: 360 QYFFKPTVQTVIERAIAAAPLGEMTWARMDYPKW 393
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 26.6 bits (56), Expect = 2.4
Identities = 19/90 (21%), Positives = 37/90 (41%)
Frame = +3
Query: 15 VEKIIDRAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHT 194
+E+IID N ++ ++ W K +K+ V RA++ + P+D
Sbjct: 1446 LEEIIDYKKNMQYENNLDSLKKTWRKRLEGCQKNVDVWHNTLRFRALV---LSPQDSPEM 1502
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPS 284
W++ A+ C + + Y + PS
Sbjct: 1503 WIKLADLCRRSDRLKLSNQCLTYLMGRDPS 1532
>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.8 bits (54), Expect = 4.2
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Frame = -3
Query: 284 GREHGQRVP----VHGAGALERALSGASFSVFHPSVLLIFGFNSV 162
G+ HG R V G LE G + F SV+ +FG NS+
Sbjct: 69 GKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSI 113
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +3
Query: 171 EPEDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLR 305
+P + T +ED ++ + E C R + GY +S + +S+W R
Sbjct: 291 DPNLPRITRIEDIDSLSEEN---CTRYLKGYGVSYDENDQSLWKR 332
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +2
Query: 455 VSWSLAFQANPNSEEIWLAAVKLESENKEY 544
++W A P E+W KL SE+ E+
Sbjct: 192 IAWMAAAHLKPKDHELWFTCAKL-SESLEF 220
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 219 RKLQRLPSKCASDLRVQFRDR 157
RKL PS ++D+RV F+DR
Sbjct: 584 RKLLWYPSMGSADVRVNFKDR 604
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 101 YGFFEPMFAVDLNPVGAQRR 42
Y EPM V + P+G+ RR
Sbjct: 698 YSHIEPMLKVSITPIGSFRR 717
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 277 SRPRSLSGFAPPTWRSSTGLAPASRRCCSGPSR 375
S P + G APP+ +S+ ++ ++ C G ++
Sbjct: 108 SVPEAAYGSAPPSTFASSAISEEAKNACKGDAK 140
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.6 bits (51), Expect = 9.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 183 QKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAY 314
Q+ TW D +G EC A + L P +KSI AA+
Sbjct: 264 QRDTWTYDINLVGHQGPLEC--ATFNPYLYEDPFQKSIIASAAH 305
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 404 EPQHLRLGTVRDGPLQQRLEAGASP 330
E Q++R +GP+ Q LE GA+P
Sbjct: 145 EFQNVRNEIAANGPIDQLLEEGAAP 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,557
Number of Sequences: 5004
Number of extensions: 41616
Number of successful extensions: 153
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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