Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0450
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28342| Best HMM Match : HAT (HMM E-Value=0.043) 170 6e-43
SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3) 31 0.47
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 30 1.1
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0) 30 1.1
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0) 29 1.9
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 4.4
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09) 28 4.4
SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086) 28 4.4
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 28 5.8
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 28 5.8
SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_28342| Best HMM Match : HAT (HMM E-Value=0.043)
Length = 758
Score = 170 bits (414), Expect = 6e-43
Identities = 90/169 (53%), Positives = 112/169 (66%), Gaps = 27/169 (15%)
Frame = +3
Query: 3 NTHMVEKIIDRAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPED 182
N MVEKII+RA+ SL +NGVEINR+ W K+A E EK+ +V TCQAIIR VIG G+E ED
Sbjct: 222 NMPMVEKIIERAVASLKSNGVEINRDQWIKDAEECEKAQSVETCQAIIRTVIGVGVEEED 281
Query: 183 QKHTWMEDAEACATEGA----------------FEC----ARAVYGYALSVF-------P 281
+KHTWM+DA++ T C A + Y + +++ P
Sbjct: 282 RKHTWMDDADSSRTHTTTHFYFPRQMSSGRSKNVTCDMCVANSAYECSRAIYAHALTVFP 341
Query: 282 SKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAKSKWL 428
SKKS+WLRAAY EK +GTR SLE+LLQ AV HCPK+EVLWLMGAKSKW+
Sbjct: 342 SKKSVWLRAAYFEKNYGTRESLESLLQSAVKHCPKAEVLWLMGAKSKWM 390
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/29 (86%), Positives = 26/29 (89%)
Frame = +2
Query: 464 SLAFQANPNSEEIWLAAVKLESENKEYDR 550
+LAFQANPNSEEIWLAAVKLESEN E R
Sbjct: 402 ALAFQANPNSEEIWLAAVKLESENNEDQR 430
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/132 (21%), Positives = 57/132 (43%)
Frame = +3
Query: 33 RAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAE 212
RAI + + + W + A + G + ++++++ + H + E W+ A+
Sbjct: 330 RAIYAHALTVFPSKKSVWLRAAYFEKNYGTRESLESLLQSAVKHCPKAEV---LWLMGAK 386
Query: 213 ACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSE 392
+ AR++ A P+ + IWL A LE ++ LLQRA + +
Sbjct: 387 SKWMANDIPSARSILALAFQANPNSEEIWLAAVKLESENNEDQRARKLLQRARMNACTAR 446
Query: 393 VLWLMGAKSKWL 428
V+ + K +W+
Sbjct: 447 VM-MKSIKLEWV 457
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Frame = +3
Query: 144 IRAVIGHGIEPEDQK-HTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLE 320
++AV+ + Q W++ A A E + VY AL P+ IW A LE
Sbjct: 101 MKAVVAQAVRQLPQSVRLWIK---AAAVETEIVAKKRVYRKALEHIPNSVRIWKAAVELE 157
Query: 321 KQHGTRASLETLLQRAVAHCPKSEVLWLMGAK 416
+ R +L RAV CP S LWL A+
Sbjct: 158 EPEDARI----MLSRAVECCPTSVELWLALAR 185
Score = 37.5 bits (83), Expect = 0.007
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 243 ARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLW 401
AR+V P +WL A +E + G + TL+ +A+ CP + VLW
Sbjct: 490 ARSVLEQGRQRNPKSPELWLEAVRIETRGGRKDFARTLMAKAMQECPTAGVLW 542
Score = 35.9 bits (79), Expect = 0.022
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Frame = +3
Query: 171 EPEDQKHTWMEDAEACATE----------GAFECARAVYGYALSVFPSKKSIWLRAAYLE 320
EPED + E C T +E AR V A P+ + IW+ AA LE
Sbjct: 158 EPEDARIMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRLIWITAAKLE 217
Query: 321 KQHGTRASLETLLQRAVA 374
+ + +E +++RAVA
Sbjct: 218 EANNNMPMVEKIIERAVA 235
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 228 GAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWL 404
G + AR + ++ P W+ AA LE+ G + + + C K+E +WL
Sbjct: 32 GDIKKARLLLKSVITTNPQHAPGWIAAARLEEVTGRMQAARNTIMKGTEVCEKNEDIWL 90
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 279 PSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWL 404
P+ +WL + LE++ G ++L++ PKS LWL
Sbjct: 468 PTSIPLWLLLSRLEEKTGQATKARSVLEQGRQRNPKSPELWL 509
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 476 QANPNSEEIWLAAVKLESENKEYD 547
Q NP S E+WL AV++E+ D
Sbjct: 499 QRNPKSPELWLEAVRIETRGGRKD 522
>SB_9503| Best HMM Match : Bac_DNA_binding (HMM E-Value=3.3)
Length = 110
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 381 PKSEVLWLMGAKSKWLRXRRTSGPGYPGRWPSRPIPTLKRSGWPP 515
PK E++ + + K + + T+G G+ RP+PTL+ G PP
Sbjct: 24 PKPELVKRLSQEKKEIEEKDTNGNLLAGKPKLRPLPTLQSIGKPP 68
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 381 PKSEVLWLMGAKSKWLRXRRTSGPGYPGRWPSRPIPTLKRSGWPP 515
PK E++ + + K + + T+G G+ RP+PTL+ G PP
Sbjct: 759 PKPELVKRLSQEKKEIEEKDTNGNLLAGKPKLRPLPTLQSIGKPP 803
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +3
Query: 132 CQAIIRAVIG-HGIEPEDQKHTWMEDAEACATEGAFECARAV 254
CQ + + + HGIE + +H + C ++GA E AR +
Sbjct: 1047 CQGVTCSCVNAHGIEVKSTRHARADGKPNCPSQGAHEMARTI 1088
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -3
Query: 401 PQHLRLGTVRDGPLQQRLEAGASPVLLLQVGGAKPDRLLGREHGQ 267
PQ++R GT+ GPL R EA VLL + D + G E Q
Sbjct: 1941 PQYVRGGTL-SGPLDDRGEAAKKMVLLTEASDVLLDDIGGHERDQ 1984
>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
Length = 437
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +3
Query: 228 GAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWL 404
G + AR + ++ P W+ AA LE+ G + + + C K+E +WL
Sbjct: 291 GDIKKARLLLKSVITTNPQHAPGWIAAARLEEVTGRMQAARNTIMKGTEVCEKNEDIWL 349
>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 753
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = +1
Query: 319 RSSTGLAPASRR---CCSGPSRTVPSRRCCGSWAPSP 420
RS G APAS R C+GP +P+ + G W P P
Sbjct: 393 RSHAGSAPASPRPPRVCTGPGHALPTLKSPG-WVPVP 428
>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 915
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 316 WRSSTGLAPASRRCCSGPSRTVPSRRCCGSWAPSPSG 426
WR+ T ++ + C G S RCC + P P+G
Sbjct: 513 WRNETPVSRCNDICAPGQYPVNGSTRCCWTCVPCPAG 549
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +1
Query: 280 RPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSRRCC 399
RP + S P W+ G+ C S P++RCC
Sbjct: 998 RPDNRSEACPAPWKGLDGICDRMGDQCKSDSECRPNQRCC 1037
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/40 (27%), Positives = 17/40 (42%)
Frame = +1
Query: 280 RPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSRRCC 399
RP + S P W+ G+ C S P+++CC
Sbjct: 1053 RPDNRSEACPAPWKGLDGICDRMGDQCQSDSECRPNQQCC 1092
>SB_22707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1499
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 285 KKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLW 401
K +IW+ LE +GT+ SL + +RA+ H +V +
Sbjct: 1322 KLNIWVALMNLENLYGTQESLIKVFERALQHNEPKKVFF 1360
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 340 PASRRCCSGPSRTVPSRRCCGSWAPSPSGFAXDVPAARG 456
PA + C SG S T P G++ SP GF P G
Sbjct: 793 PAGQSCMSGSSPTTPQDCAAGTY--SPPGFGTCKPCQSG 829
>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
Length = 598
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 253 CTGTRCPCSRPRSLSGFAPPTWRSSTG 333
C GT+CP RP +G+ + SSTG
Sbjct: 497 CFGTKCPPLRPVDANGYFKESHCSSTG 523
>SB_4961| Best HMM Match : Suf (HMM E-Value=0.00086)
Length = 809
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 285 KKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLW 401
K +IW+ LE +GT+ SL + +RA+ H +V +
Sbjct: 248 KLNIWVALMNLENLYGTQESLIKVFERALQHNEPKKVFF 286
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 TGTRCPCSRPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSR-RCCGSWAPSPSGFA 432
+G + R+ + PP S G AP SGP P R S AP P+G +
Sbjct: 178 SGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSS 237
Query: 433 XDVPA 447
+PA
Sbjct: 238 RPLPA 242
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 256 TGTRCPCSRPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSR-RCCGSWAPSPSGFA 432
+G + R+ + PP S G AP SGP P R S AP P+G +
Sbjct: 90 SGNKPTFGNSRTSTNGPPPPPHSRHGSAPPPPERSSGPPPPPPGRGPSQRSLAPPPTGSS 149
Query: 433 XDVPA 447
+PA
Sbjct: 150 RPLPA 154
>SB_40377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = +3
Query: 279 PSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAKSKWLRXRRTSGPGY 458
P W R + + G+R+++ + +RA+ P S LW +L+ RR G
Sbjct: 30 PFSVKCWQRYVEHKTKTGSRSAVNMIYERALKELPGSYKLWY-----NYLKIRRKQVKGR 84
Query: 459 PGRWP 473
P + P
Sbjct: 85 PVKDP 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,864,666
Number of Sequences: 59808
Number of extensions: 374377
Number of successful extensions: 1318
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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