Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0450
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.22 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 451  GPLVRRXRSHLDLAPMSHSTSDLGQCA-TARCSSVSRL 341
            G ++R  RSH    P  H   +L  CA   RC    R+
Sbjct: 1670 GTVIRSIRSHSTWDPRRHMYEELNHCAPNRRCPPPPRM 1707


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 293 RLLGREHGQRVPVHGAGALE 234
           R +G  HGQRV V     LE
Sbjct: 378 RSMGSHHGQRVMVRTCNGLE 397


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 348 ETLLQRAVAHCPKSE 392
           E +L + +A CP+SE
Sbjct: 68  EVVLAKTIAECPESE 82


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 409 APSPSGFAXDVPAARGILVAGLPGQ 483
           A +PS      P A+G   AG P +
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAGQPSK 542


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -1

Query: 475 EGQRPGYPGPLVRRXRSHLDLAPMSHSTSDL 383
           E Q+   P P+    +SH DL     S+  L
Sbjct: 356 EAQKSQKPSPVTGASKSHGDLELRQRSSKSL 386


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,857
Number of Sequences: 438
Number of extensions: 3302
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)