Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0450
(550 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 182 1e-46
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 36 0.013
At5g45990.1 68418.m05656 crooked neck protein, putative / cell c... 33 0.17
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c... 33 0.17
At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containi... 29 1.5
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c... 29 2.0
At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase, ... 29 2.0
At5g07770.1 68418.m00889 formin homology 2 domain-containing pro... 29 2.7
At4g07524.1 68417.m01175 GTP-binding protein, putative similar t... 29 2.7
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei... 29 2.7
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei... 29 2.7
At3g20730.1 68416.m02623 pentatricopeptide (PPR) repeat-containi... 28 3.6
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 3.6
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 3.6
At5g28740.1 68418.m03530 transcription-coupled DNA repair protei... 28 4.7
At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containi... 28 4.7
At5g49060.1 68418.m06070 DNAJ heat shock N-terminal domain-conta... 27 6.2
At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein si... 27 6.2
At3g57360.1 68416.m06385 expressed protein 27 8.3
At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ... 27 8.3
At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate 5-ki... 27 8.3
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 182 bits (444), Expect = 1e-46
Identities = 84/142 (59%), Positives = 107/142 (75%)
Frame = +3
Query: 3 NTHMVEKIIDRAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPED 182
NT MV KIIDR I +L GV I+RE+W EA E+ G+V+TCQAII+ IG G+E ED
Sbjct: 564 NTAMVGKIIDRGIKTLQREGVVIDRENWMSEAEACERVGSVATCQAIIKNTIGIGVEEED 623
Query: 183 QKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQ 362
+K TW+ DA+ C G+ E ARA+Y +ALSVF +KKSIWL+AA LEK HG+R SL+ LL+
Sbjct: 624 RKRTWVADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLR 683
Query: 363 RAVAHCPKSEVLWLMGAKSKWL 428
+AV + P++EVLWLMGAK KWL
Sbjct: 684 KAVTYVPQAEVLWLMGAKEKWL 705
Score = 50.4 bits (115), Expect = 8e-07
Identities = 31/117 (26%), Positives = 54/117 (46%)
Frame = +3
Query: 66 EINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECA 245
E + W +A E +K G++ T +AI + + +K W++ A+ + G+ E
Sbjct: 622 EDRKRTWVADADECKKRGSIETARAIYAHALSVFLT---KKSIWLKAAQLEKSHGSRESL 678
Query: 246 RAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAK 416
A+ A++ P + +WL A + G + +LQ A A P SE +WL K
Sbjct: 679 DALLRKAVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFK 735
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2
Query: 470 AFQANPNSEEIWLAAVKLESENKEYDR 550
A+ A PNSEEIWLAA KLE ENKE +R
Sbjct: 719 AYAAIPNSEEIWLAAFKLEFENKEPER 745
Score = 43.2 bits (97), Expect = 1e-04
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +3
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
W+ A+ ARA+ A P +WL A E +H + E L+ +A+
Sbjct: 831 WLSLADLEEKVNGLNKARAILTTARKKNPGGAELWLAAIRAELRHDNKREAEHLMSKALQ 890
Query: 375 HCPKSEVLW 401
CPKS +LW
Sbjct: 891 DCPKSGILW 899
Score = 35.1 bits (77), Expect = 0.031
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 243 ARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWL 404
AR +Y P + W+ AA +E+ G + +QR CPK+E +WL
Sbjct: 372 ARLLYKSLTQSNPKNPNGWIAAARVEEVDGKIKAARFQIQRGCEECPKNEDVWL 425
Score = 35.1 bits (77), Expect = 0.031
Identities = 30/127 (23%), Positives = 54/127 (42%)
Frame = +3
Query: 33 RAITSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAE 212
RAI + + + + W K A + G+ + A++R + + + E W+ A+
Sbjct: 645 RAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVTYVPQAEV---LWLMGAK 701
Query: 213 ACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSE 392
G ARA+ A + P+ + IWL A LE ++ LL +A +E
Sbjct: 702 EKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPERARMLLAKA-RERGGTE 760
Query: 393 VLWLMGA 413
+W+ A
Sbjct: 761 RVWMKSA 767
Score = 34.3 bits (75), Expect = 0.054
Identities = 21/86 (24%), Positives = 31/86 (36%)
Frame = +3
Query: 147 RAVIGHGIEPEDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQ 326
R ++ E + WM+ A G E R + L FP+ +WL LE++
Sbjct: 747 RMLLAKARERGGTERVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQLEER 806
Query: 327 HGTRASLETLLQRAVAHCPKSEVLWL 404
+ HCP LWL
Sbjct: 807 FKHLEQARKAYDTGLKHCPHCIPLWL 832
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 237 ECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLWLMGAK 416
E AR + A+ P +W+ A LE T A + +L +A PK +W+ AK
Sbjct: 495 EDARILLHRAVECCPLHLELWVALARLE----TYAESKKVLNKAREKLPKEPAIWITAAK 550
Query: 417 SKWLRXR---RTSGPGYPGRWPSRPIPTLKRSG 506
+ + G+ R I TL+R G
Sbjct: 551 LEEANGKLDEANDNTAMVGKIIDRGIKTLQREG 583
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +3
Query: 237 ECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVLW 401
E ARA + A++V P W E QHG+ + ++ + VA PK W
Sbjct: 943 EKARAWFERAVTVGPDIGDFWALFYKFELQHGSDEDRKEVVAKCVACEPKHGEKW 997
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 36.3 bits (80), Expect = 0.013
Identities = 18/70 (25%), Positives = 35/70 (50%)
Frame = +3
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
W++ A+ + AR V+ A+S+ P +W + ++E++ G A +L+R +
Sbjct: 94 WVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERWI- 152
Query: 375 HCPKSEVLWL 404
HC + WL
Sbjct: 153 HCSPDQQAWL 162
>At5g45990.1 68418.m05656 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 673
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 147 RAVIGHGIEPEDQKHT-WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEK 323
R+V +E E + HT W++ AE AR V+ ++++ P +W + Y+E+
Sbjct: 98 RSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEE 157
Query: 324 QHGTRASLETLLQRAVAHCPKSEVLWL 404
+ G + +R + P + WL
Sbjct: 158 KLGNVTGARQIFERWMNWSPDQKA-WL 183
>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 705
Score = 32.7 bits (71), Expect = 0.17
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Frame = +3
Query: 147 RAVIGHGIEPEDQKHT-WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEK 323
R+V IE + + HT W++ AE AR V+ A+++ P +W + ++E+
Sbjct: 112 RSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEE 171
Query: 324 QHGTRASLETLLQRAVAHCPKSEVLWL 404
G A + +R + P + WL
Sbjct: 172 ILGNIAGARQIFERWMDWSPDQQG-WL 197
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = +3
Query: 195 WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
W++ A+ ++ + AR+V+ A+ ++WL+ A E ++ S + RAV
Sbjct: 95 WVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVT 154
Query: 375 HCPKSEVLW 401
P+ + LW
Sbjct: 155 LLPRVDQLW 163
Score = 29.1 bits (62), Expect = 2.0
Identities = 30/121 (24%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Frame = +3
Query: 72 NREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDA---------EACAT 224
N + WF E G + I I + + P ++K W E T
Sbjct: 340 NYDSWFDYVRLEESVGNKDRIREIYERAIAN-VPPAEEKRYWQRYIYLWINYALFEEIET 398
Query: 225 EGAFECARAVYGYALSVFPSKK----SIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSE 392
E E R VY L + P K IWL AA E + +L A+ PK +
Sbjct: 399 ED-IERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDK 457
Query: 393 V 395
+
Sbjct: 458 I 458
>At3g17040.1 68416.m02175 tetratricopeptide repeat (TPR)-containing
protein low similarity to SP|Q9FNS4 PsbB mRNA maturation
factor Mbb1, chloroplast precursor {Chlamydomonas
reinhardtii}; contains Pfam profile: PF00515: TPR Domain
Length = 652
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +3
Query: 219 ATEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVAHCPKSEVL 398
A G +E AR ++ A + WL A LE Q + L ++AV PK+
Sbjct: 316 AKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFA 375
Query: 399 W 401
W
Sbjct: 376 W 376
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/101 (22%), Positives = 40/101 (39%)
Frame = +3
Query: 72 NREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECARA 251
NR W + G V + +++ IGH + P D A ARA
Sbjct: 372 NRFAWHVWGVFEAGVGNVERGRKLLK--IGHALNPRDPVLLQSLGLLEYKHSSA-NLARA 428
Query: 252 VYGYALSVFPSKKSIWLRAAYLEKQHGTRASLETLLQRAVA 374
+ A + P + +W+ ++E + G + L QRA++
Sbjct: 429 LLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALS 469
>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 413
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 147 RAVIGHGIEPEDQK-HT-WMEDAEACATEGAFECARAVYGYALSVFPSKKSIWLRAAYLE 320
R+V +E E + HT W++ AE + AR V+ A+ + P W + ++E
Sbjct: 91 RSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHME 150
Query: 321 KQHGTRASLETLLQRAVAHCPKSEVLWL 404
+ G + +R + P + WL
Sbjct: 151 EILGNIDGARKIFERWMDWSPDQQA-WL 177
>At2g18640.1 68415.m02171 geranylgeranyl pyrophosphate synthase,
putative / GGPP synthetase, putative /
farnesyltranstransferase, putative similar to
gi:1944371; contains GB:L22347
Length = 372
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 48 LSANGVEINREHWFK-EAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQK 188
LS+ G+E N E I K+G++ A+I AVIG G E E +K
Sbjct: 235 LSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEK 282
>At5g07770.1 68418.m00889 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 722
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/48 (41%), Positives = 21/48 (43%)
Frame = -3
Query: 401 PQHLRLGTVRDGPLQQRLEAGASPVLLLQVGGAKPDRLLGREHGQRVP 258
P HL VR P Q RL G SP+ LL GA P L G P
Sbjct: 667 PPHL--SHVRSIPFQTRLVMGTSPLPLLVREGAPPPTLPSMSGGAPPP 712
>At4g07524.1 68417.m01175 GTP-binding protein, putative similar to
GTP-binding protein [Pisum sativum]
gi|303736|dbj|BAA02109
Length = 70
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 316 WRSSTGLAPASRRCCSGPSRTVPSRR 393
W S P SRRC S + VP+RR
Sbjct: 32 WESRKSFIPFSRRCNSAVTAAVPNRR 57
>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 611
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Frame = +1
Query: 307 PPTWRSSTGLAPASRR-----CCSGPSRTVPSRRCCGSWAPSPSGF----AXDVPAARGI 459
PP+WR +GLAP R C ++ + S C S A F + D+PA R I
Sbjct: 383 PPSWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLDLSMDIPAWREI 442
Query: 460 LVAGLP 477
V P
Sbjct: 443 PVPWTP 448
>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
(LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
F-box subunit; identical to Adagio 2 GI:13487070 from
[Arabidopsis thaliana]; contains Pfam profiles PF01344:
Kelch motif and PF00646: F-box domain; identical to cDNA
LOV kelch protein 2 GI:18146957; identical to cDNA
Adagio 2 (ADO2) GI:13487069
Length = 601
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Frame = +1
Query: 307 PPTWRSSTGLAPASRR-----CCSGPSRTVPSRRCCGSWAPSPSGF----AXDVPAARGI 459
PP+WR +GLAP R C ++ + S C S A F + D+PA R I
Sbjct: 373 PPSWREVSGLAPPIPRSWHSSCTLDGTKLIVSGGCADSGALLSDTFLLDLSMDIPAWREI 432
Query: 460 LVAGLP 477
V P
Sbjct: 433 PVPWTP 438
>At3g20730.1 68416.m02623 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 564
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/97 (23%), Positives = 40/97 (41%)
Frame = +3
Query: 42 TSLSANGVEINREHWFKEAIEAEKSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACA 221
T ++ +G+E EH +SG + A+IR+ GI TW +AC
Sbjct: 443 TMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSK--EGIVSLSSS-TWGAFLDACR 499
Query: 222 TEGAFECARAVYGYALSVFPSKKSIWLRAAYLEKQHG 332
G + ++ LS+ P K ++ A + +G
Sbjct: 500 RHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANG 536
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 277 SRPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSRRCCGSWAPSPSGFAXDVPAAR 453
S+P S S APPT R ++ P+ R +VPS R SP + P+ R
Sbjct: 165 SKPSSASANAPPTLRPASTRVPSQRI----TPHSVPSPRPSSPRGASPQAISSKPPSPR 219
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +1
Query: 277 SRPRSLSGFAPPTWRSSTGLAPASRRCCSGPSRTVPSRRCCGSWAPSPSGFAXDVPAAR 453
S+P S S APPT R ++ P+ R +VPS R SP + P+ R
Sbjct: 164 SKPSSASANAPPTLRPASTRVPSQRI----TPHSVPSPRPSSPRGASPQAISSKPPSPR 218
>At5g28740.1 68418.m03530 transcription-coupled DNA repair
protein-related similar to XAB2 (XPA-binding protein 2)
[Homo sapiens] GI:10566459
Length = 917
Score = 27.9 bits (59), Expect = 4.7
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Frame = +3
Query: 123 VSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECARAVYGYALSVFPSKKS--- 293
V + I I G+ +D K ++ AE + G + ARA+Y Y+ S F +S
Sbjct: 676 VPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALYKYS-SQFADPRSDPE 734
Query: 294 IWLRAAYLEKQHGTRASLETLLQ 362
W + E QHG + +L+
Sbjct: 735 FWNKWHEFEVQHGNEDTYREMLR 757
>At1g69350.1 68414.m07958 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535: PPR repeat
Length = 787
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 111 KSGAVSTCQAIIRAVIGHGIEPEDQKHTWMEDAEACATEGAFECARAVYG 260
++G V + + ++ G+EP+ T + E CA G AR+V+G
Sbjct: 179 ENGEVVKALRMFKCMVDDGVEPDAV--TMISVVEGCAELGCLRIARSVHG 226
>At5g49060.1 68418.m06070 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 354
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 140 CLAS*NSARLFSFYGFFEPMFAVDLNPVGAQRRYRTINNFF 18
CL+ NS R F G + V +RRY T N+FF
Sbjct: 149 CLSDGNSRRQFDQVGIVDEFDHVQRRNRRPRRRYNTRNDFF 189
>At2g16730.1 68415.m01919 glycosyl hydrolase family 35 protein
similar to beta-galactosidase BG1 GI:15081596 from
[Vitis vinifera]
Length = 848
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 440 YQRPGVSWSLAFQANPNSEEIWLAAVKLESENKEY 544
Y++PG AF AN N+E AA K++ KEY
Sbjct: 383 YEQPGTKVCAAFLANNNTE----AAEKIKFRGKEY 413
>At3g57360.1 68416.m06385 expressed protein
Length = 240
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 446 RPGVSWSLAFQANPNSEEIWLAAVKLESEN 535
R GVSW+L A PN EE A + ++N
Sbjct: 123 RHGVSWTLKDAARPNGEEESACAGECPADN 152
>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
GB:AAF19609 from [Arabidopsis thaliana]
Length = 354
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 459 PGRWPSRPIPTLKRSGWPPSNWRARTKST 545
PG S P L GW P +WR +++ +
Sbjct: 174 PGDLDSMQSPILVNRGWVPRSWREKSQES 202
>At2g26420.1 68415.m03170 1-phosphatidylinositol-4-phosphate
5-kinase, putative / PIP kinase, putative /
PtdIns(4)P-5-kinase, putative / diphosphoinositide
kinase, putative similar to
phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
[Arabidopsis thaliana] GI:3702691; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF02493: MORN repeat
Length = 705
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 399 WLMGAKSKWLRXRRTSGPGYPGRWPSRPIPTLKRSGWPPSN 521
WL G K + R +G GY G W + R W N
Sbjct: 131 WLWGRKHGYGEKRYANGDGYQGNWKANLQDGNGRYVWSDGN 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,241,778
Number of Sequences: 28952
Number of extensions: 248563
Number of successful extensions: 932
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -