Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0446
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 31 0.91
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24... 31 0.91
02_02_0652 - 12651163-12653210,12653327-12653627 31 0.91
10_08_0047 + 14430437-14430463,14430615-14430714,14431076-144311... 31 1.2
07_01_0310 + 2209084-2209554 30 1.6
05_01_0482 + 4016784-4017323 30 1.6
09_01_0173 + 2495864-2496312,2497420-2497457,2497915-2498123,249... 29 2.8
06_01_0835 - 6315762-6316844 29 2.8
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531... 29 3.7
06_02_0346 - 14837982-14838122,14838208-14838327,14838411-148385... 29 3.7
05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322... 29 4.9
02_04_0323 + 22026866-22027016,22029569-22029949,22030114-22031246 29 4.9
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 29 4.9
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 28 6.4
11_04_0392 + 17131839-17131943,17134182-17134258,17134385-171344... 28 6.4
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412... 28 6.4
02_05_0107 + 25897487-25898059 28 6.4
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540... 28 8.5
03_05_0370 + 23541188-23542537 28 8.5
01_05_0687 + 24288648-24292746,24293737-24293844,24294333-242944... 28 8.5
>11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 359 KGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSS 481
+GS+++ AR +DEFLNQ + GE + EN+ + S
Sbjct: 895 EGSIIRLARRLDEFLNQLKAAAQAVGEVN-LENKFGAASDS 934
>08_01_0033 +
244930-245105,245297-245344,245835-246539,246652-246796,
246893-247240,247882-248721,248786-248832,249470-249596,
249672-249836,249973-251370,251453-251713,251802-252161
Length = 1539
Score = 31.1 bits (67), Expect = 0.91
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +3
Query: 516 QSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPEDLKQHIKTLS 695
+S++S + S+ITN + +SIRY + +P +++ LP+ +P L++++ LS
Sbjct: 572 KSLSSSTKVDAPSSITNSSSSVGEDASIRYDS---KPPLHSQRLPSPVPGTLRKYVGMLS 628
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 31.1 bits (67), Expect = 0.91
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +3
Query: 528 SIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPEDLKQHIKT 689
SIPA K +LASS+SS TT P P T+D+ M +++ + KT
Sbjct: 133 SIPAATERVFPATKASLASSTSSTTMTT--PAPSTETKDVGAGMDKEVLKSEKT 184
>10_08_0047 +
14430437-14430463,14430615-14430714,14431076-14431153,
14431340-14431427,14431536-14431640,14431998-14432540,
14433023-14433157,14433256-14433364,14433578-14433726,
14433800-14434046
Length = 526
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 356 DKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSSGPLGE 496
D G KW ++ LN G G G G R P SP+ P+ E
Sbjct: 150 DNGPARKWVSLVRRTLNSLAGTGGGGGGGGGGGMRTP-SPAPDPVVE 195
>07_01_0310 + 2209084-2209554
Length = 156
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +3
Query: 405 INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPALAS 584
+ TV AA VPK A +PA +V M ++PA+ PT+T+ PA+ +
Sbjct: 50 VPTVPNAALPPMPAVPKVALPPMPAVPAVPTVPAVALPPMPAVPAV-PTATLPPMPAVPA 108
Query: 585 SSSSI 599
+++
Sbjct: 109 VPNAV 113
>05_01_0482 + 4016784-4017323
Length = 179
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 496 LAEWSAAGRAWYAVFGTMSFTTAAAFLTVLI 404
L E G WY +F T++FT A A L L+
Sbjct: 63 LTEGQMRGIRWYIMFNTVTFTIALALLITLV 93
>09_01_0173 +
2495864-2496312,2497420-2497457,2497915-2498123,
2498894-2499205
Length = 335
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 158 AGSLPSLSLCARGPGPSPSCTGRS*TPPI 72
+ SL +LSLC + P PSP + R P +
Sbjct: 4 SSSLSTLSLCTQSPSPSPVASARLVAPAV 32
>06_01_0835 - 6315762-6316844
Length = 360
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +3
Query: 462 YHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNN 635
Y ++ S+ + +M I + PTST T+ P L SSSSI TT P Y++
Sbjct: 9 YQLSSSSSSSSSDQELMKALEPFIRSASPTSTSTSTP-LFYSSSSISTTTTTPFSYSS 65
>06_03_0999 - 26752410-26752523,26752601-26752830,26752914-26753169,
26753763-26753828,26753921-26754046,26754148-26754288,
26754377-26754387,26754523-26754670,26755326-26755454,
26755573-26755710,26755808-26755876,26755955-26756023,
26756565-26756720,26756885-26756985,26757068-26757215,
26757540-26757702,26757833-26757965,26758049-26758226,
26758330-26758572,26758664-26758732,26759063-26759187,
26759727-26759766,26760756-26760812,26762831-26762935
Length = 1004
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3
Query: 459 AYHALPA--ADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYN 632
A++AL A + +AR+ S ++ P+S T P A+S ++I + RP+P
Sbjct: 825 AFNALAANFENPNARNLSTPPPAIRKPSPKSPSSDPTKPPQRAASIAAISASFERPRPTL 884
Query: 633 NTEDLPTNMPEDLKQHIKTLSGKPDAN 713
+ + + P+ K ++ KP+AN
Sbjct: 885 IPKSIKAS-PDVNKPQVEASKPKPEAN 910
>06_02_0346 -
14837982-14838122,14838208-14838327,14838411-14838564,
14838793-14838866,14838962-14839095,14839207-14839326,
14843174-14843308,14843842-14843976,14844343-14845003,
14845103-14845264,14845348-14845510,14880834-14881021
Length = 728
Score = 29.1 bits (62), Expect = 3.7
Identities = 24/79 (30%), Positives = 37/79 (46%)
Frame = +3
Query: 477 AADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTN 656
A DH S + S T+ PALQP+ IT AL +++ + T+ P P+ E PT
Sbjct: 311 AQDHHTHSTPDI--SPTNSPALQPSRIITPDAAL---NATPQITSTEPHPHLPGELFPTM 365
Query: 657 MPEDLKQHIKTLSGKPDAN 713
+ + +PDA+
Sbjct: 366 DKTATGDETQAHTPQPDAD 384
>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
32233-33714
Length = 1189
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = -2
Query: 466 WYAVFGTMSFTTAAAFLTVLIQKFVNNPGPFEHRSLIVDLVIDQSTFHVGSIWHWPEAQT 287
W + G M++ A+ + + F +VDL I T + +W AQ
Sbjct: 987 WSRLLGWMAYGVASGVIIFFLTSAALQHQAFRRGGEVVDLAILSGTAYTCVVWA-VNAQM 1045
Query: 286 WITADY*TI 260
+TA+Y T+
Sbjct: 1046 TVTANYFTL 1054
>02_04_0323 + 22026866-22027016,22029569-22029949,22030114-22031246
Length = 554
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -2
Query: 607 VYLIELEEDARAGLFVIVLVGWSAGIEVIDWYITDLLLAEWSAAGRAWYAVFGTMSFTTA 428
+YL E L V L+ WS V Y+ ++ A W A A +FG + F A
Sbjct: 173 IYLFVGREVFMRSLHVFALLLWSQAAPV---YLAEIAPARWRGAFTASIGLFGNLGFLMA 229
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 58 TGPREMGGVQDLPVQLGDGPGPRAHRLKLGKDPAIL 165
T +MGG+Q L Q+ GP+AH++ + P +
Sbjct: 517 TPSNQMGGMQPLHPQMNQMGGPQAHQMYNNQQPGAM 552
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 468 ALPAADHS-ARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNT 638
A+ ADH A + + +PALQ +I+ P SSSSS RY+ + T
Sbjct: 741 AIAVADHDFADYLFCPHTTFHYVPALQGALSISANPKDTSSSSSSRYSNSSGTIFQKT 798
>11_04_0392 +
17131839-17131943,17134182-17134258,17134385-17134411,
17134512-17134634,17134738-17134981,17135081-17135098
Length = 197
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 353 NDKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPSSGP 487
N +G+ + R + E L ++ G+G+G A + SPSS P
Sbjct: 130 NFRGAAFIYNRFVREQLRKHGLAGAGAGAAASVGKKDKSSPSSSP 174
>09_04_0047 -
14139706-14140140,14140234-14140636,14141028-14141272,
14141341-14141576,14141651-14141939
Length = 535
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -2
Query: 706 SGLPDSVLMCCLRSSGMFV--GRSSVLLYGCGLPVVYLIELEEDARAG 569
+G ++VLM +R S GR++V YG GL + L E+EE + G
Sbjct: 271 NGELEAVLMESIRRSREIADEGRAAVATYGRGLLAMLLSEMEEKEKNG 318
>02_05_0107 + 25897487-25898059
Length = 190
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +2
Query: 326 ESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGS------GSGEAHGAENRVPCSPSSGP 487
+ ++ ++ + +VLKW R + + R++GS GEA + +V G
Sbjct: 64 QQQIVVHQRGGEKAVLKWGRSLARRMRLLRRRGSERLLEESPGEATTPKGQVAVYVGGGE 123
Query: 488 LGEKQVCDVPVDDFN 532
GE VPV FN
Sbjct: 124 PGESMRYVVPVVYFN 138
>08_02_1556 -
27852247-27852738,27853005-27853197,27854006-27854070,
27854161-27854199,27854572-27854592,27854819-27855052,
27855420-27855504,27855953-27856026,27856516-27856647,
27856735-27856834,27857296-27857361,27857472-27857509,
27858013-27858219,27858378-27858427,27858871-27858940,
27859065-27859133,27859456-27859530,27860456-27860530,
27860887-27860934
Length = 710
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 534 PALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNM 659
P+L S N+ AL SS S+ T+G+ Q NN+ + M
Sbjct: 401 PSLGTLSNSPNRGALGSSVSTSNTTSGQSQTSNNSSPILLQM 442
>03_05_0370 + 23541188-23542537
Length = 449
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 521 RLVHHRLASRRVVRCWESMVRGFRHH 444
R+V R+A R VV W SM+ + HH
Sbjct: 252 RMVFDRMACRNVVS-WSSMIDAYSHH 276
>01_05_0687 + 24288648-24292746,24293737-24293844,24294333-24294442,
24295208-24295282
Length = 1463
Score = 27.9 bits (59), Expect = 8.5
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3
Query: 423 AAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIR 602
AA V L++P+ A ++P+ S+++ + SI +P+S T P + SS
Sbjct: 804 AAPKVLLVMPEEAVESVPS------SEALDVEKPASITQAEPSSPNTPPPGFENFKSSWL 857
Query: 603 YTTGRPQPYNNTEDLP 650
P P T+ LP
Sbjct: 858 PLPTTPPPVETTDVLP 873
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,755,112
Number of Sequences: 37544
Number of extensions: 543930
Number of successful extensions: 1891
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1889
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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