Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0446
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)               90   2e-18
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_25359| Best HMM Match : p450 (HMM E-Value=0)                        29   3.8  
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)                29   5.0  
SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)                     29   5.0  
SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)                   29   5.0  
SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)               28   6.6  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   28   6.6  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   28   8.7  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_7992| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 3/180 (1%)
 Frame = +2

Query: 83  FRIFLYNSETGQVLGRTGSSWAKXXXXXXXXXXXXVGFFAALLAVFYQTLDTKVPKWQLD 262
           F+ FLYN E G+V+GR G SWAK             GFFAA+L++F  TL  +    +L 
Sbjct: 24  FKTFLYNKEKGEVMGRNGQSWAKIGLFFLVFYLCLAGFFAAMLSIFLSTLPDRADGPKLT 83

Query: 263 SSIIGSNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSGEA 442
             I G  P L   P+P    +E     Y  N   S       I+ FLNQY ++G  + + 
Sbjct: 84  QYIAG-KPVL--NPVPSN-KIEG----YDPNKASSYSSHVSDINSFLNQYVRQGGANKDQ 135

Query: 443 HGAENRVPCSPSSGPLGEKQVCDVPVDDFNPC---TPANQYNYEQAGPCVFLKLNKIYNW 613
              +     S    P   K+ C   + +  PC       +Y ++   PC FL++NK++N+
Sbjct: 136 FAPDFCNGTSGEPRPKDAKKQCRFDLTNLGPCYKNETGFKYGFDTGSPCFFLRMNKVFNF 195


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 525 TSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPEDLK 674
           T+ P  QPT+  TN+P    ++ + + T    QP N   D PTN P +L+
Sbjct: 237 TNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTDQPTNQPANLQ 286



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 525 TSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPED 668
           T+ P  QPT+  TN+P    ++      T +     N  + PTN+P D
Sbjct: 229 TNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQTNQPTNQPNQPTNLPTD 276



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 525 TSIPALQPTSTITNKPALASSSSSIRYTTGRP--QPYNNTEDLPTN 656
           T+ P  QPT+  TN+P    ++      T +P  QP N   + PTN
Sbjct: 213 TNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTNQPTN 258


>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1448

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 305 MPDTANVESTLIYYKVNDKGSVLKWARVIDEFLNQYRKKGSGSGEAHGAENRVPCSPS 478
           +PD  +  ST    +V +KG+++K A +ID     +R +  G    H  +  VP SP+
Sbjct: 330 IPDFKDCSSTNQTERVEEKGALIKKA-MIDSSREDFRDQAHGEHVTHPIKWLVPSSPT 386


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/67 (31%), Positives = 31/67 (46%)
 Frame = +3

Query: 501  KSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPEDLKQH 680
            +SV+ QSM S   +       NK A    S  +   TG+    ++T +  T    D++QH
Sbjct: 863  RSVLAQSMFSQKVVVVPDRKMNKDADEGVSQKVEEMTGKMSELSSTTEKATG---DIQQH 919

Query: 681  IKTLSGK 701
            I  LS K
Sbjct: 920  ISELSAK 926


>SB_1300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +3

Query: 480 ADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSS---SSIRYTTGRPQPYNNTEDLP 650
           A H A S +    ++T+    +   T  + P+ A  S   +S++ T G+P+ YN  +D  
Sbjct: 20  AHHGASSSAAHIANLTNADFRKLLMTPRSAPSAAPPSVKPASVKETVGKPRQYNEDDDPT 79

Query: 651 TNMPEDLKQHIK 686
           T   +  K + K
Sbjct: 80  TARRKKKKYYAK 91


>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 519 SMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNTEDLPTNMPEDLKQHIKTLSG 698
           S++ +  L+P S+ TNK    S +S  + +T R  P ++  + P++  + L Q  +   G
Sbjct: 483 SVSELSMLKPASSDTNKKPSPSQASFSQPSTLRNSPSSSLRNSPSSSMDQLFQQKQAPMG 542

Query: 699 KPDANT 716
               NT
Sbjct: 543 GTTPNT 548


>SB_25359| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1084

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +2

Query: 323 VESTLIYYKVNDKGSVLKWARVI-----DEFLNQYRKKGSGSG-EAHGAENRVPCSPSSG 484
           V+ST I Y +  KG+  ++ R+I      E +N  R      G +A  + NR+  +PSS 
Sbjct: 415 VDSTTILYWIKGKGTWSQFVRLIHNPAISEKINPNRITREPFGLKADASLNRITLNPSSA 474

Query: 485 PLGEKQVCDVP 517
             GE    ++P
Sbjct: 475 NPGETLYVNIP 485


>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
          Length = 672

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 132 VRPRTWPVSELYRKILNASHFPRSGGGA*YCS-ATLFLSAMFTR 4
           + P++WP +++YR++L+       GG   Y   AT    A+F +
Sbjct: 405 IYPKSWPENDIYRQVLSILLMVNVGGALLYLGLATFSYYAIFDK 448


>SB_4559| Best HMM Match : ICAM_N (HMM E-Value=5.3)
          Length = 244

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = +2

Query: 278 SNPGLGFRPMPDTANVESTLIYYKVNDKGSVLKWARVIDEF-LNQYRKKGSGSGEAHGAE 454
           + P  G R     A  E  L YY   D+G V +   V  E  L++Y    S    +HG  
Sbjct: 34  NRPTRGERRFAYWALAECILAYYVGTDEG-VSEVLHVAGEKRLHRYYYTSSNDSHSHGET 92

Query: 455 NRVPCSPSSGPLGEKQVCD 511
           +      S   LGE+ +C+
Sbjct: 93  DSNSSGQSDVSLGEEAICN 111


>SB_4318| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 229

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 130 HRLKL-GKDPAILPYLLRDFGGLLRCS--ASGI 219
           H LK+  KDP +   L+  FGG++ CS  ASGI
Sbjct: 142 HALKIVSKDPRVKVILVNIFGGIVDCSVVASGI 174


>SB_26920| Best HMM Match : Rap_GAP (HMM E-Value=6.9e-29)
          Length = 1890

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 543 GVQGLKSSTGTSQTCFSPSGPL 478
           G +G  SS GT Q  +SP GP+
Sbjct: 479 GTRGRTSSVGTGQQSYSPQGPV 500


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
 Frame = +3

Query: 450 PKTAYHALPAADHSARS-KSVMYQSMTSIPALQPTS---TITNKPALASSSSSIRYTTGR 617
           P+ +  A P    S  S ++    S  S P   P S   T + K +  SS  S R T+G+
Sbjct: 334 PRASPRASPRDQSSHSSPRNSRNSSRKSSPKPSPRSSRPTSSRKLSRKSSRKSSRPTSGQ 393

Query: 618 PQPYNNTEDLPTNMPEDLKQHIKTLSGKPD 707
             P N +     +   D     K   GKPD
Sbjct: 394 QSPVNVSGSDTDSSDSDSSVSSKASEGKPD 423


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 407  QYRKKGSGSGEAHGAENRVPCSPSSGPLGEKQVCDV 514
            +Y   GS S E    ++ +PC     P+GE+++ DV
Sbjct: 1636 KYNMAGSVSHEPAAHDSVMPCKIGVKPMGEREMSDV 1671


>SB_51664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -1

Query: 584 RRKGRLVRNCTGWLECRD*SHRLVHHRLASRRVVRCWESMVRGFRHH 444
           + +GR +RNCT    C     R   H+  +      +E++  G  HH
Sbjct: 34  KTRGRNIRNCTSGTLCCRVGRRAARHQAIAPLYTCRYEAVWAGLDHH 80


>SB_48142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
 Frame = +3

Query: 372 SNGPGLLTNF*INTVRKAAAVVKLMVPKTAYHALPAADHSARSKSVMYQSMTSIPALQPT 551
           S GPG L ++      K   VVK   P +  + L       R+ ++    +     L+  
Sbjct: 105 SGGPGKLRSY---WEEKVHVVVKRKAPDSPVYELKPEGAGGRNITLQRNLLLPCDFLEAE 161

Query: 552 STITNKPALASSSSSIRYTTGRP--QPYNNTEDLPTNMPED 668
            T  N P      +  +   G+P  QP  + ED+ +   +D
Sbjct: 162 ETTANNPRRQRQQNKTQGNVGQPEVQPPVDHEDVESMSDDD 202


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +3

Query: 417  RKAAAVVKLMVP-KTAYHALPAADHSARSKSVMYQSMTSIP--ALQPTSTITNKPALASS 587
            RK    VK+ VP KT   A  A  H+ R +       T++           ++  + +SS
Sbjct: 762  RKKTPAVKIRVPPKTVPIAATAVQHTRRPRRRRRVVPTALGNRTCYEEELFSSSSSSSSS 821

Query: 588  SSSIRYTTGRPQPYNNTEDLPTNMPEDL 671
            SS++   TG  Q  N   DL +  P D+
Sbjct: 822  SSTMSVLTGSAQVVNPGMDLFSVPPTDV 849


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 146  PSLSLCARGPGPSPSCTGRS*TPPISLGPVA 54
            P+ +  A G GP PS TG++  P +S  PVA
Sbjct: 2311 PTTTSVAMGAGPPPSATGQA-LPVMSPAPVA 2340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,536,179
Number of Sequences: 59808
Number of extensions: 561613
Number of successful extensions: 1789
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1751
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)