Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0446
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled ...    25   2.3  
AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin bi...    25   2.3  
AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein...    25   2.3  
AF043436-1|AAC05661.1|  263|Anopheles gambiae putative pupal-spe...    25   3.1  

>AY301275-1|AAQ67361.1|  611|Anopheles gambiae G-protein coupled
           receptor protein.
          Length = 611

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 365 SVLKWARVIDEFLNQYRKKGSGSGEAHG 448
           S+ K  R +DE +NQ  +KG G G   G
Sbjct: 534 SLEKDLRSLDENVNQIHQKGGGGGGGGG 561


>AJ441131-1|CAD29630.1|  567|Anopheles gambiae putative chitin
           binding protein protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 492 ARSKSVMYQSMTSIPALQPTSTITNKPALASSSSS 596
           A S+SV  QS  +     P+S+ T+  +  SSSSS
Sbjct: 524 AASESVRSQSNNTTVVSTPSSSTTSSSSTTSSSSS 558


>AJ439353-2|CAD27924.1|  612|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 612

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 365 SVLKWARVIDEFLNQYRKKGSGSGEAHG 448
           S+ K  R +DE +NQ  +KG G G   G
Sbjct: 535 SLEKDLRSLDENVNQIHQKGGGGGGGGG 562


>AF043436-1|AAC05661.1|  263|Anopheles gambiae putative
           pupal-specific cuticular proteinCP2c protein.
          Length = 263

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +3

Query: 471 LPAADHSARSKSVMYQSMTSIPALQPTSTITNKPALASSSSSIRYTTGRPQPYNNT 638
           LP A H + + S       + PA+Q   ++   PA+   S+   Y    P  Y ++
Sbjct: 20  LPVAHHGSIATSHSTIQHHAAPAIQHVGSVHAAPAIYQHSAPAIYQHSAPAIYQHS 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 822,466
Number of Sequences: 2352
Number of extensions: 19066
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)