Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0445
         (755 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   3.3  
Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein ...    24   5.8  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   7.7  

>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 461  SCRRGAGILFPRTACHGPHSLQGRDSWTPEGSH 363
            SC R AG  F  T+     S   R S +  GSH
Sbjct: 1330 SCERIAGETFECTSTSSKFSTSSRGSGSDSGSH 1362


>Z69980-1|CAA93820.1|  134|Anopheles gambiae GTP-binding protein
           protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
 Frame = -1

Query: 410 PHSLQG-RDSWTPEGSHHTQTT 348
           P S +  ++ W PE +HH Q T
Sbjct: 30  PSSFENVKEKWVPEITHHCQKT 51


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 462 LNIPRISFFYAETTSVPV----SIGFMGFTMSAKGGITLNYGRRSQTASTVFPL 611
           + I R + +Y     VP     S+  +GFT+    G  L  G     + TVF L
Sbjct: 225 IQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLGLTILVSQTVFSL 278


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 808,717
Number of Sequences: 2352
Number of extensions: 18523
Number of successful extensions: 44
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)