Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0444
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   2.0  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   6.2  
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    24   8.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.2  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    24   8.2  

>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 246 TSPSQFQLRRSSHYHNRNILELCTLRFFLDP 154
           +S +   + RSS + N ++   C LRF+ +P
Sbjct: 9   SSSAYSAIARSSSWFNNSLFSSCLLRFYSNP 39


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 195 NILELCTLRFFLDPH 151
           N ++ C+L  FLDPH
Sbjct: 408 NSMKQCSLHLFLDPH 422


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 107 E*RRHSSSFATCGPRCGSKKNRSV 178
           E R H      CGP   SKK+ SV
Sbjct: 107 EFRSHVQKITGCGPLSASKKDLSV 130


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 221 EEAHIIITEIFWNFVRSGFFWIHTGAHRLR 132
           EE H ++ E+  + + SG F+   G   L+
Sbjct: 654 EELHFVLLEVISSVINSGIFYQGIGLSALQ 683


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 177 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 266
           Y +  YF  D   FF   ++ A++ L +P+
Sbjct: 428 YSLKHYFFLDQSDFFTTFLDNAQHELRKPA 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,431,229
Number of Sequences: 5004
Number of extensions: 27518
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)