Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0444
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0493 - 25615507-25615524,25615564-25615816,25616127-256162...    29   1.1  
03_05_0787 + 27696347-27696708,27696851-27696857,27697066-276973...    27   3.4  
05_01_0174 - 1206240-1206677                                           26   7.7  

>04_04_0493 -
           25615507-25615524,25615564-25615816,25616127-25616242,
           25616410-25616662,25616736-25616823,25616920-25616994,
           25617065-25617140,25617528-25617791
          Length = 380

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -3

Query: 267 PKVVAIGTSPSQFQLRR----SSHYHNRNILELCTLRFFLDPHRGPQVA 133
           P     GTS S +Q RR    S+  HN+++ ELC  R   D  R  +V+
Sbjct: 30  PPDFLFGTSSSAYQARRRNPHSTMLHNKSLSELCFFRLKADIWRVTKVS 78


>03_05_0787 +
           27696347-27696708,27696851-27696857,27697066-27697371,
           27697454-27697873
          Length = 364

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 96  VNGLSSAV-IHPASQPVGPGVD 158
           V+GL+S V  HPASQP  P VD
Sbjct: 253 VDGLTSFVPTHPASQPTNPIVD 274


>05_01_0174 - 1206240-1206677
          Length = 145

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +1

Query: 139 LWAPVWIQKKPERTKFQNISVMIM*ASSKLK 231
           L +P W+Q+ PE  +   +S M+  A+++++
Sbjct: 6   LMSPSWLQELPEEQRADAVSSMVYEANARIR 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,999,041
Number of Sequences: 37544
Number of extensions: 170160
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)