Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0444
         (359 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.1  
SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)                   27   6.1  

>SB_15253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 249 GTSPSQFQLRRSSHYHNRNILE 184
           G+SP+++Q+R+  H+H R  +E
Sbjct: 34  GSSPAKYQVRKGIHFHRRKPIE 55


>SB_6257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1218

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 144 GPGVDPKKTGAYKVPEYFCYDNVSF 218
           G GVD +K   Y    Y+ YD ++F
Sbjct: 699 GSGVDAEKYWVYSYELYYSYDKITF 723


>SB_51942| Best HMM Match : 7tm_1 (HMM E-Value=0.059)
          Length = 408

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 165 KTGAYKVPEYFCYDNVSFFEAEIEMA 242
           +TGA +VP   CY N     AE E+A
Sbjct: 249 RTGANQVPTVICYSNEIATNAESEIA 274


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,390,356
Number of Sequences: 59808
Number of extensions: 188405
Number of successful extensions: 346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)