Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0444
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical... 32 0.14
AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical ... 29 0.98
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 28 1.7
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p... 27 3.9
Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical pr... 27 5.2
U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily ass... 27 5.2
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 26 6.9
AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical ... 26 6.9
U80448-10|AAB37823.1| 482|Caenorhabditis elegans Hypothetical p... 26 9.1
>AC084158-33|AAK68575.1| 83|Caenorhabditis elegans Hypothetical
protein Y69A2AR.3 protein.
Length = 83
Score = 31.9 bits (69), Expect = 0.14
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 177 YKVPEYFCYDNVSFFEAEIEMAKYRLPQPS 266
YK EY +D S+ AEI M K R+ QPS
Sbjct: 42 YKCDEYLKFDKYSYAHAEITMNKDRVVQPS 71
>AF016674-6|AAB66129.1| 530|Caenorhabditis elegans Hypothetical
protein C03H5.6 protein.
Length = 530
Score = 29.1 bits (62), Expect = 0.98
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 264 KVVAIGTSPSQFQLRRSSHYHNRNILELCTLRFFLDPHR 148
K+V + + P F +RR+ ++ N +E RFF DP++
Sbjct: 395 KIVTMTSIPKAFNIRRTQNFDFENKIE--RFRFFSDPNK 431
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 129 ASQPVGPGVDPKKTG-AYKVPEYFCYD 206
A QP PG D + G YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +3
Query: 129 ASQPVGPGVDPKKTG-AYKVPEYFCYD 206
A QP PG D + G YK PE FC+D
Sbjct: 113 AGQPGAPGADADEQGFHYKAPE-FCFD 138
>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical protein
C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 195 FCYDNVSFFEAEIEMAKYRLPQPS 266
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
protein C47E8.8 protein.
Length = 1675
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 195 FCYDNVSFFEAEIEMAKYRLPQPS 266
F Y+NV++ +AE Y P+P+
Sbjct: 1521 FSYENVAYTQAEFSSTTYACPEPT 1544
>Z81068-8|CAB02988.1| 490|Caenorhabditis elegans Hypothetical
protein F25H5.7 protein.
Length = 490
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 108 SSAVIHPASQPVGPGVDPKKTGAYKVPEYFC 200
S +V QP PG DP+K A+K + C
Sbjct: 146 SESVDEDNEQPPEPGSDPRKIWAFKAAKMKC 176
>U41545-4|AAK39134.1| 665|Caenorhabditis elegans Temporarily
assigned gene nameprotein 52 protein.
Length = 665
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 82 RRFLKSMD*VAPSFIQLRNLWAPVWIQKKPERTKFQNISVM 204
R ++K++ V FIQ NLW P KK R+ F IS +
Sbjct: 67 RTYVKALTIVDEIFIQQLNLWCPK--SKKCFRSMFGEISAI 105
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 154 WIQKKPERTKFQNISVMIM*ASSKLKLRWRSTDCHNL 264
++ + ++KFQ + + S LKLR R ++ H L
Sbjct: 1389 FVDRSRSKSKFQTNDIAVSLNSDDLKLRIRQSNAHTL 1425
>AL023845-2|CAA19538.1| 334|Caenorhabditis elegans Hypothetical
protein Y51B9A.4 protein.
Length = 334
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 234 QFQLRRSSHYHNRNILELCTL 172
+F+L + SHYH+R LC+L
Sbjct: 198 RFELIQQSHYHSRPQKSLCSL 218
>U80448-10|AAB37823.1| 482|Caenorhabditis elegans Hypothetical
protein F59A3.9 protein.
Length = 482
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 16 LDFTVKAPHKTKVLVFLRLQQIRRFL 93
+DFTVK P FL+L Q+R+ L
Sbjct: 119 IDFTVKVPTLEGANPFLKLMQLRKEL 144
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,907,672
Number of Sequences: 27780
Number of extensions: 154099
Number of successful extensions: 349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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