Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0444
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.9  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 164 FWIHTGAHRLRSWMNDGATQSID 96
           FWIH GA +  S +  GA   +D
Sbjct: 126 FWIHGGAFQFGSGIPMGAKYLMD 148


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 164 FWIHTGAHRLRSWMNDGATQSID 96
           FWIH GA +  S +  GA   +D
Sbjct: 126 FWIHGGAFQFGSGIPMGAKYLMD 148


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 130 LRNLWAPVWIQKKPERTKFQNISV 201
           L+N+W P    K  +   FQ +++
Sbjct: 115 LKNMWRPDSFFKNAKSVTFQTMTI 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,467
Number of Sequences: 438
Number of extensions: 2110
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)