Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0444
         (359 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68160.1 68414.m07786 expressed protein                             28   1.6  
At4g12980.1 68417.m02027 auxin-responsive protein, putative simi...    27   5.0  
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    26   8.7  

>At1g68160.1 68414.m07786 expressed protein
          Length = 273

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 98  QWIE*RRHSSSFATCGPRCGSKKNRSVQSS 187
           +W+  +R  S    CG R  S K + V+SS
Sbjct: 124 RWLRRKRRKSEELNCGRRASSSKGKQVESS 153


>At4g12980.1 68417.m02027 auxin-responsive protein, putative similar
           to auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 394

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 111 YSIH*LQESSNLLEAKKN*DFRFVWSLH 28
           +SI  LQ  + LL  +K+  FRFVW+++
Sbjct: 298 FSIATLQMFAMLLRPRKDHKFRFVWNIY 325


>At5g40480.1 68418.m04909 expressed protein ; expression supported
           by MPSS
          Length = 1919

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 217 SSKLKLRWRSTDCHNL 264
           SS L LRW  T C+NL
Sbjct: 864 SSTLSLRWELTSCNNL 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,363,767
Number of Sequences: 28952
Number of extensions: 140064
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)