Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0443
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    23   2.5  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    22   3.3  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   3.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    22   3.3  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   5.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   5.8  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 458 PLIPEQTFGSIKSLAISREVA 520
           PL+P+Q F   + LA S EV+
Sbjct: 241 PLVPQQGFNMERLLAPSTEVS 261


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 269 NSPSGLWHRLRSWLG 313
           N+ S ++H L SWLG
Sbjct: 98  NTKSFIYHFLHSWLG 112


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 342 VPAPRSPRPRHELTRRVLPHYLS 410
           V   R+PRP+H+   R++  + S
Sbjct: 209 VDESRTPRPKHDGRGRIVERFTS 231


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 269 NSPSGLWHRLRSWLG 313
           N+ S ++H L SWLG
Sbjct: 98  NTKSFIYHFLHSWLG 112


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +3

Query: 489 SNLWLYQEKWPVSRFRVRQLH 551
           S +WL    W V+ F V  L+
Sbjct: 312 STMWLKDPSWLVNAFNVDPLY 332


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 221 HGDFYPLSPQNTRKYTNSPSGLWHR 295
           HG +  ++ QN+  Y +   G W R
Sbjct: 204 HGSWAGVTAQNSPLYASPLDGEWQR 228


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,017
Number of Sequences: 336
Number of extensions: 2699
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)