Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0443
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.67
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 27 2.7
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 26 4.7
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 26 4.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 6.2
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 6.2
SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces... 25 8.2
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 25 8.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 25 8.2
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -2
Query: 365 TRAPRSGDTA--ALRPPPPGPASS 300
T+AP SGD+A L PPPP P S
Sbjct: 292 TQAPSSGDSANGGLPPPPPPPPPS 315
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 534 ESGKLATSLDIAKDLMDPNVCSGIRGAPSTDAI 436
E+GK+ +L + + +DP V G APS++++
Sbjct: 563 ENGKIDVALRLLRKHIDPKVSLGNNTAPSSNSV 595
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 474 KHLGPSNLWLYQEKWPVSRFRVRQLHHL 557
K G SN WLY+ K P+ + + + HH+
Sbjct: 105 KQFGGSNWWLYR-KSPLKSWWIERRHHI 131
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 404 VMGEDTARQLVPGTRAPRSGDTAALRPPPPGPASSATCA 288
VM + A + AP + AA+ PPP PA +A A
Sbjct: 370 VMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPAPAAAPA 408
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 242 SPQNTRKYTNSPSGLWHRLRSWL 310
+P N R YT S G+ RL +W+
Sbjct: 7 NPNNVRVYTVSGEGVTQRLPNWI 29
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 447 YWELPLSRSKHLGPSNLWLYQEKWPVS 527
+W+LP SR+ ++ S L L WP+S
Sbjct: 516 FWQLPQSRAGNIDFSALVLGTSFWPLS 542
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = -2
Query: 374 VPGTRAPRSGDTAALRPPPPGP 309
+P T P+ D PPPP P
Sbjct: 223 IPPTYTPKQADPLPAPPPPPPP 244
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 244 SAEHKKVHQQSIRTMAQVAELAGPGGGGRSAAVSPLRGARVP 369
SA K+H+ QV L G G G+S A+ L G P
Sbjct: 88 SANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILSGKMKP 129
>SPAC343.01c |erg8||phosphomevalonate kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 8.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 498 WLYQEKWPVSRFRVRQLH 551
WLY W VS RV Q++
Sbjct: 61 WLYNIDWTVSPIRVHQIY 78
>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 557 KVVELANAKAGNWPLLLI*PKI*WTQM 477
KV+ LA + G PL+++ P I W Q+
Sbjct: 113 KVIRLARERLGKPPLIIVAPSI-WQQV 138
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = +1
Query: 235 SAQSAEHKKVHQQSIRTMAQVAELAGPGGGGRSAAVSPLRGARVPGTS*RAVSSPI 402
+A A + H Q + VA SA VSP+ G VP AVSS +
Sbjct: 907 NAAVAAGAQQHNQQLAAFQAVAASQNSSNNS-SAGVSPIAGRMVPRLQPYAVSSSL 961
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,799
Number of Sequences: 5004
Number of extensions: 41190
Number of successful extensions: 135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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