Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0443
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0420 + 9051728-9051754,9053244-9053530,9055263-9055500,905... 31 0.52
05_03_0662 + 16732965-16733037,16733310-16733413,16734468-167348... 27 1.9
05_06_0186 - 26207298-26208548,26208743-26208853,26209286-262095... 29 2.1
02_04_0508 - 23550785-23551219,23551717-23552670 29 2.1
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 29 2.7
02_04_0452 + 23044190-23045227 29 2.7
01_05_0790 + 25253363-25254136,25259037-25259897 29 2.7
10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140 29 3.6
03_06_0345 - 33281126-33281783,33281872-33282063,33282175-332822... 29 3.6
01_06_0967 + 33461902-33462106,33462829-33463250 29 3.6
12_02_0985 + 25052753-25053691 28 4.8
08_01_0386 + 3424561-3425346 28 4.8
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184... 28 4.8
01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563 28 4.8
05_01_0281 + 2186500-2187435,2187518-2187616,2187707-2187772,218... 28 6.3
04_01_0269 - 3605525-3605625,3605939-3606071 28 6.3
03_04_0113 + 17382370-17382714 28 6.3
09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006 27 8.4
07_01_0551 - 4105721-4105774,4106090-4106159,4106880-4106945,410... 27 8.4
04_01_0223 + 2813129-2814014,2815928-2816309,2816358-2816459,281... 27 8.4
02_03_0286 + 17317316-17317516,17317610-17318245 27 8.4
01_06_1052 + 34129126-34130490 27 8.4
>09_02_0420 +
9051728-9051754,9053244-9053530,9055263-9055500,
9057010-9057204,9058075-9058339,9058520-9058827
Length = 439
Score = 31.5 bits (68), Expect = 0.52
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 577 LERWATQRWWSWRTRKRETGH 515
LER +RW WR R+R TGH
Sbjct: 302 LERRRRRRWVEWRRRRRATGH 322
>05_03_0662 +
16732965-16733037,16733310-16733413,16734468-16734861,
16736291-16736901,16739238-16739289,16739771-16739826,
16739962-16740190,16740980-16741212,16741480-16741740
Length = 670
Score = 27.5 bits (58), Expect(2) = 1.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 341 TAALRPPPPGPASSATCAIVLMDCWCT 261
T + PPP P+++A ++ CWC+
Sbjct: 316 THSAAPPPDSPSTAAPPSLPSAACWCS 342
Score = 20.6 bits (41), Expect(2) = 1.9
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 386 ARQLVPGTRAPRSGDTAALRPPPP 315
+R +PG R R G A R P P
Sbjct: 269 SRLSMPGARRGRPGVRAPRRRPAP 292
>05_06_0186 -
26207298-26208548,26208743-26208853,26209286-26209507,
26209623-26209658
Length = 539
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -2
Query: 407 KVMGEDTARQ----LVPGTRAPRSGDTAALRPPPPGPASSATC 291
K G TAR+ L+PG R P RP P P +A C
Sbjct: 13 KSQGPTTARRRPLRLLPGNRTPHPPPPQGSRPRKPAPTPAAAC 55
>02_04_0508 - 23550785-23551219,23551717-23552670
Length = 462
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 368 GTRAPRSGDTAALRPPPPGP 309
G + R GD A LR PPPGP
Sbjct: 27 GGKRGRGGDGARLRQPPPGP 46
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 253 VLRTERIEVAVDRAVECEATLTTLGGAHQHAQDDACDSHESAGD 122
+L R+ + + +CE TLT G H+ A DD + ++ +
Sbjct: 175 LLLRHRLHIVGEALAQCEHTLTEFGIEHREAVDDTAGAAKTVAE 218
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2
Query: 371 PGTRAPRSGDTAALRPPPPGPASSATCA 288
P TR P T+A PPPP ASSAT A
Sbjct: 194 PSTRPP----TSAPPPPPPAAASSATTA 217
>01_05_0790 + 25253363-25254136,25259037-25259897
Length = 544
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 353 RSGDTAALRPPPPGPAS-SATCAIVLMD 273
RS +PPPP P S +A C +V D
Sbjct: 34 RSSSATTTKPPPPSPVSPAAKCTVVFPD 61
>10_08_0615 - 19259402-19259597,19260248-19260735,19264895-19265140
Length = 309
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 304 LAGPGGGGRSAAVSPLRGARVPGT 375
+A P GGG + SP+ GA P T
Sbjct: 1 MAAPNGGGAAGMSSPVNGASAPAT 24
>03_06_0345 -
33281126-33281783,33281872-33282063,33282175-33282217,
33282751-33282874,33282966-33283058,33284484-33284685,
33284751-33284857,33285462-33285543,33285629-33285666,
33285751-33285837,33286324-33286434,33286554-33286904
Length = 695
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -2
Query: 398 GEDTARQLVPG-TRAPRSGDTAALRPPPPGP 309
GED +L P TR PR+ ++ PPPP P
Sbjct: 27 GEDAVVELTPRRTRLPRACNSRPKVPPPPPP 57
>01_06_0967 + 33461902-33462106,33462829-33463250
Length = 208
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -2
Query: 428 QNRMAIRKVMGEDTARQLVPG-TRAPRSGDTAALRPPPPGPASS 300
+N I VMGE A P AP +G T+ PP P P S
Sbjct: 126 RNEKLIVVVMGERAANGTAPAPALAPSAGTTSPNSPPSPPPPPS 169
>12_02_0985 + 25052753-25053691
Length = 312
Score = 28.3 bits (60), Expect = 4.8
Identities = 25/90 (27%), Positives = 35/90 (38%)
Frame = +1
Query: 298 AELAGPGGGGRSAAVSPLRGARVPGTS*RAVSSPITFLIAIRFCCRYGVSTGSSPYPGAN 477
A L PGGGG A + ++ A S TF++A+ C VS GAN
Sbjct: 67 AALILPGGGGGGNATTTTSSYSYTASNFNASRS--TFVVALPPSCSRTVSEARRWLSGAN 124
Query: 478 IWVHQIFGYIKRSGQFPAFAFANSTTFELP 567
V G R + +N+T +P
Sbjct: 125 YGVSSRTGLFLRGDCHRNSSASNATNCSIP 154
>08_01_0386 + 3424561-3425346
Length = 261
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = -2
Query: 443 TPYLQQNRMA---IRKVMGEDTA--RQLVPGTRAPRSGDTAALRPPPPGPASSATCAIVL 279
T Y+++ A ++K +GE A R++ A RS +A R PPP A A
Sbjct: 198 TTYVEREEPADAVLKKPLGEVAAMVREVAAKLPAARSASVSAARCPPPPAALLAPALAGP 257
Query: 278 MDCW 267
CW
Sbjct: 258 PPCW 261
>04_01_0162 +
1845295-1846317,1846430-1846565,1848436-1848626,
1848780-1848887,1849001-1849204,1849294-1849525,
1849602-1849751,1849830-1850007,1850416-1850519,
1850611-1850933,1851274-1851459,1851672-1851899
Length = 1020
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 368 GTRAPRSGDTAALRPPPPGPASSA 297
G P+ G AA PPP GP +SA
Sbjct: 82 GAGPPQQGPFAAAAPPPQGPFTSA 105
>01_07_0001 + 40324322-40324737,40325921-40326051,40326872-40327563
Length = 412
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 365 TRAPRSGDTAALRPPPPGPASSATCA 288
T + S AA+ PPPP PASS++ A
Sbjct: 47 TVSAASAAPAAVAPPPPPPASSSSSA 72
>05_01_0281 +
2186500-2187435,2187518-2187616,2187707-2187772,
2187850-2188266
Length = 505
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 350 SGDTAALRPPPPGPASSATCA 288
+G A LRPPPP P TC+
Sbjct: 18 NGAPAPLRPPPPPPFQPFTCS 38
>04_01_0269 - 3605525-3605625,3605939-3606071
Length = 77
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 371 PGTRAPRSGDTAALRP-PPPGPASSATCAIVL 279
P +AP++G+ AA P PP P S+ A+VL
Sbjct: 16 PKEKAPQAGEAAAATPTPPEQPQSANPRALVL 47
>03_04_0113 + 17382370-17382714
Length = 114
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 256 KKVHQQSIRTMAQVAE---LAGPGGGGRSAAVSPLRGARVP 369
+++ +Q +R +A A A P GGG +AA SPL +P
Sbjct: 15 RRIQRQGVREVADPATDVAAATPSGGGSTAAKSPLLPPPLP 55
>09_02_0093 + 4178852-4179220,4179518-4180113,4180214-4181006
Length = 585
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 307 AGPGGGGRSAAVSPLRGAR 363
+GPGGGG S A P G R
Sbjct: 224 SGPGGGGSSGAPGPSHGPR 242
>07_01_0551 -
4105721-4105774,4106090-4106159,4106880-4106945,
4106985-4107479,4107491-4107672,4107728-4108222
Length = 453
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 371 PGTRAPRSGDTAALRPPPPGPASSATCA 288
P R R G+ + +PP P P ATC+
Sbjct: 237 PPRRRRREGEESVAQPPVPPPRRIATCS 264
>04_01_0223 +
2813129-2814014,2815928-2816309,2816358-2816459,
2816727-2817249
Length = 630
Score = 27.5 bits (58), Expect = 8.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -3
Query: 583 FVLERWATQRWWSWRTRKRE 524
F+L W+ WW WR+ R+
Sbjct: 315 FLLLVWSILSWWKWRSSSRD 334
>02_03_0286 + 17317316-17317516,17317610-17318245
Length = 278
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -2
Query: 338 AALRPPPPGPASSATCAIVLMDC 270
A RP P G A SAT A+ L C
Sbjct: 2 ACKRPTPDGDACSATAAVALSPC 24
>01_06_1052 + 34129126-34130490
Length = 454
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/24 (58%), Positives = 14/24 (58%)
Frame = -2
Query: 371 PGTRAPRSGDTAALRPPPPGPASS 300
P R PR G T A PPPP PA S
Sbjct: 152 PLARKPRRGGTNATAPPPP-PALS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,307,353
Number of Sequences: 37544
Number of extensions: 357300
Number of successful extensions: 2639
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2596
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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