Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0443
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.40 
SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)                     28   4.9  
SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_6273| Best HMM Match : MAM (HMM E-Value=0)                          28   4.9  
SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)                    28   6.5  
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)                   27   8.6  
SB_46064| Best HMM Match : PH (HMM E-Value=1.9e-21)                    27   8.6  

>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -2

Query: 449 VLTPYLQQNRMAIRKVMGEDTARQLVPGTRAPRSGDTAALRPPPPG--PASSAT 294
           VL   L +   AI  V G      +  G RAP  G  A   PPPP   P S+ T
Sbjct: 97  VLQTLLTKTSQAISAVQGPPAPTSVPSGPRAPPGGPGAPPPPPPPAVVPPSAVT 150


>SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 217 RAVECEATLT-TLGGAHQHAQDDACDSHESAGDNANWSEDSRV 92
           +A E E T T T G    HA+    D  +  G+NAN  ED RV
Sbjct: 155 KAKELEGTATDTRGENSPHAEIPWTDGDDRIGENANGYEDRRV 197


>SB_28687| Best HMM Match : SWIM (HMM E-Value=0.16)
          Length = 408

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 11  VLTAASYRGCGENEEPDHYAARIAFTGNSRVLGPVCIVAG 130
           ++T+  YR   ++E P +    I  TG++ + G    VAG
Sbjct: 63  IITSKCYRSMRKSEPPHNLEVTIKLTGDNSIAGRCSCVAG 102


>SB_16638| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 263 YTNSPSGLWHRLRSWLGLVEE 325
           Y   P   WH+L SW GLV +
Sbjct: 59  YNLVPEAAWHKLVSWYGLVND 79


>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
          Length = 4272

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/67 (23%), Positives = 28/67 (41%)
 Frame = -3

Query: 256  CVLRTERIEVAVDRAVECEATLTTLGGAHQHAQDDACDSHESAGDNANWSEDSRVPGESN 77
            C+  T++ +   D +   +  + T G   +  + D C    S  DN +W+        S+
Sbjct: 3014 CLANTKKCDFVPDCSDGIDEAIDTCGVPCEF-EKDTCGWVNSVSDNFDWTRHKGCTASSS 3072

Query: 76   TGSVVVG 56
            TG  V G
Sbjct: 3073 TGPCVDG 3079


>SB_4314| Best HMM Match : 4_1_CTD (HMM E-Value=1.8)
          Length = 922

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = -2

Query: 470 PG*GELPVLTPYLQQNRMAIRKVMGEDTARQLVPGTRAPRSGDTAALRPPPPGPASSAT 294
           PG   +PVL P  +Q   ++ KV    +         +  +G   + RPP     S  T
Sbjct: 813 PGVSSIPVLPPVQRQGNSSVHKVSVSPSESNPASARSSVHAGSPLSPRPPTSPKPSQCT 871


>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
          Length = 560

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 157 DDACDSHESAGDNANWSEDSRVPGESN 77
           DDA D H+ A DN N  +D  + G+++
Sbjct: 441 DDADDDHDDADDNIN-GDDDNIDGDND 466


>SB_46064| Best HMM Match : PH (HMM E-Value=1.9e-21)
          Length = 319

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 271 QSIRTMAQVAELAGPGGGGRSAAVSPLRGARVPGTS*RAVSSPIT 405
           QSIRT+ Q+   A  G  G    + PLR A     +  + + PIT
Sbjct: 143 QSIRTLPQMRSRAAFGSSGDLDRIVPLRSANSQHPNRLSAAFPIT 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,358
Number of Sequences: 59808
Number of extensions: 361021
Number of successful extensions: 1383
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)