Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0443
         (588 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058423-1|AAL13652.1|  501|Drosophila melanogaster GH20077p pro...    34   0.16 
AE013599-1964|AAF58198.1|  501|Drosophila melanogaster CG10209-P...    34   0.16 
BT003306-1|AAO25066.1| 1102|Drosophila melanogaster GH08706p pro...    31   1.5  
AE013599-1167|AAF58756.2| 1102|Drosophila melanogaster CG33144-P...    31   1.5  
BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p pro...    28   8.2  
AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-P...    28   8.2  
AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-P...    28   8.2  
AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-P...    28   8.2  

>AY058423-1|AAL13652.1|  501|Drosophila melanogaster GH20077p
           protein.
          Length = 501

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = -3

Query: 250 LRTERIEVAVDRAVE--CEATLTTLGGAHQHAQDDACDSHESAGD------NANWSEDSR 95
           L+ E     +D A E  C+A LT   G HQH      D    AG       + N  E + 
Sbjct: 109 LKAENFLTGLDYAPEHLCDAILTAAVGHHQHNMQHQKDPQSHAGQQQQQDHHTNDGETND 168

Query: 94  VPGESNTGS 68
            PG SN GS
Sbjct: 169 APGSSNGGS 177


>AE013599-1964|AAF58198.1|  501|Drosophila melanogaster CG10209-PA
           protein.
          Length = 501

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = -3

Query: 250 LRTERIEVAVDRAVE--CEATLTTLGGAHQHAQDDACDSHESAGD------NANWSEDSR 95
           L+ E     +D A E  C+A LT   G HQH      D    AG       + N  E + 
Sbjct: 109 LKAENFLTGLDYAPEHLCDAILTAAVGHHQHNMQHQKDPQSHAGQQQQQDHHTNDGETND 168

Query: 94  VPGESNTGS 68
            PG SN GS
Sbjct: 169 APGSSNGGS 177


>BT003306-1|AAO25066.1| 1102|Drosophila melanogaster GH08706p protein.
          Length = 1102

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 205  CEATLTTLGGAHQHAQDDA-CDSHESAGDNANWSEDSRVPGESNTGSVVVGLFVLTTAAV 29
            CE T+ T+G A Q  Q    C   ES   + ++S    V G  +TG+       + + +V
Sbjct: 875  CE-TICTVGAAAQPGQSSVICQMDESPSTSQSYSPQQEVAGNGSTGAAAGNGAPVLSVSV 933

Query: 28   RC 23
             C
Sbjct: 934  HC 935


>AE013599-1167|AAF58756.2| 1102|Drosophila melanogaster CG33144-PA
            protein.
          Length = 1102

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -3

Query: 205  CEATLTTLGGAHQHAQDDA-CDSHESAGDNANWSEDSRVPGESNTGSVVVGLFVLTTAAV 29
            CE T+ T+G A Q  Q    C   ES   + ++S    V G  +TG+       + + +V
Sbjct: 875  CE-TICTVGAAAQPGQSSVICQMDESPSTSQSYSPQQEVAGNGSTGAAAGNGAPVLSVSV 933

Query: 28   RC 23
             C
Sbjct: 934  HC 935


>BT010077-1|AAQ22546.1|  924|Drosophila melanogaster LD09801p
           protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 310 GPGGGGRSAAVSPLRGARVPGTS*RAVSSPITFLIAIR 423
           GPGGGG +   +P  GA  PG +   V  P  F   +R
Sbjct: 125 GPGGGGATVVGAPPPGAGKPGVA--MVPPPPVFCATLR 160


>AE013599-1997|AAM68542.1|  924|Drosophila melanogaster CG12424-PC,
           isoform C protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 310 GPGGGGRSAAVSPLRGARVPGTS*RAVSSPITFLIAIR 423
           GPGGGG +   +P  GA  PG +   V  P  F   +R
Sbjct: 125 GPGGGGATVVGAPPPGAGKPGVA--MVPPPPVFCATLR 160


>AE013599-1996|AAM68541.1|  924|Drosophila melanogaster CG12424-PB,
           isoform B protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 310 GPGGGGRSAAVSPLRGARVPGTS*RAVSSPITFLIAIR 423
           GPGGGG +   +P  GA  PG +   V  P  F   +R
Sbjct: 125 GPGGGGATVVGAPPPGAGKPGVA--MVPPPPVFCATLR 160


>AE013599-1995|AAF58176.1|  924|Drosophila melanogaster CG12424-PA,
           isoform A protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 310 GPGGGGRSAAVSPLRGARVPGTS*RAVSSPITFLIAIR 423
           GPGGGG +   +P  GA  PG +   V  P  F   +R
Sbjct: 125 GPGGGGATVVGAPPPGAGKPGVA--MVPPPPVFCATLR 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,058,890
Number of Sequences: 53049
Number of extensions: 548254
Number of successful extensions: 2962
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2918
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)