Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0443
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 32 0.35
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 32 0.35
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 1.9
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 27 2.8
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 27 7.5
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 27 7.5
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 27 7.5
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 27 9.9
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 27 9.9
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -2
Query: 410 RKVMGEDTARQL----VPGTRAPRSGDTAALRPPPPGPAS 303
R+ ED RQL V GT A +S A RPPPP PA+
Sbjct: 704 RQTEKEDLMRQLQLSIVSGTNAAQSPANAPPRPPPPRPAA 743
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 31.9 bits (69), Expect = 0.35
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = -2
Query: 410 RKVMGEDTARQL----VPGTRAPRSGDTAALRPPPPGPAS 303
R+ ED RQL V GT A +S A RPPPP PA+
Sbjct: 704 RQTEKEDLMRQLQLSIVSGTNAAQSPANAPPRPPPPRPAA 743
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/38 (47%), Positives = 19/38 (50%)
Frame = +1
Query: 286 MAQVAELAGPGGGGRSAAVSPLRGARVPGTS*RAVSSP 399
MAQ GGGG AA R ARV GTS A +P
Sbjct: 1547 MAQAGPAPPVGGGGLRAARGASRYARVGGTSSSASQAP 1584
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical protein
F54D11.2 protein.
Length = 1145
Score = 26.6 bits (56), Expect(2) = 2.8
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -2
Query: 428 QNRMAIRKVMGEDTARQLVPGT--RAPRSGDTAALRPPPPGP 309
QN +A G+D R+ G R GD RPPPP P
Sbjct: 1066 QNLVASTITTGDDMPRRASMGASPRVIERGDFRDHRPPPPPP 1107
Score = 20.6 bits (41), Expect(2) = 2.8
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -2
Query: 326 PPPPGPASSATCAIV 282
PPP GP A+ +++
Sbjct: 1131 PPPRGPVDPASISLI 1145
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 377 LVPGTRAPRSGDTAALRPPPPGPAS 303
L GT A +S A RPPPP PA+
Sbjct: 740 LTGGTNAAQSPANAPPRPPPPRPAA 764
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -2
Query: 377 LVPGTRAPRSGDTAALRPPPPGPAS 303
L GT A +S A RPPPP PA+
Sbjct: 740 LTGGTNAAQSPANAPPRPPPPRPAA 764
>Z73105-2|CAA97439.2| 803|Caenorhabditis elegans Hypothetical
protein R13.4 protein.
Length = 803
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 18 PRHRTAAVVRTKSPTTTLPVLLSPGTRESSDQ 113
P+ + A+ + PT TLPVL SP ++ Q
Sbjct: 120 PKPKDPALQASSQPTGTLPVLTSPSCPQNGQQ 151
>Z99773-3|CAE11316.1| 305|Caenorhabditis elegans Hypothetical
protein H06A10.2 protein.
Length = 305
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -2
Query: 371 PGTRAPRSGDTAALRPPPPGPASSAT 294
PG P D AA P P GPA +T
Sbjct: 193 PGPAGPAGNDGAAGTPGPDGPAGEST 218
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 368 GTRAPRSGDTAALRPPPPGPAS 303
GT A +S A RPPPP PA+
Sbjct: 359 GTNAAQSPANAPPRPPPPRPAA 380
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 202 EATLTTLGGAHQHAQDDACDSHESAGDNANWSEDSRVPGESNTGSV 65
+ T TT H+H + + S E ++ ++ S VP E N+ V
Sbjct: 5599 KTTTTTTTVTHEHFEPEDHTSDEHVVESERYASGSPVPSEENSNRV 5644
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -3
Query: 202 EATLTTLGGAHQHAQDDACDSHESAGDNANWSEDSRVPGESNTGSV 65
+ T TT H+H + + S E ++ ++ S VP E N+ V
Sbjct: 5599 KTTTTTTTVTHEHFEPEDHTSDEHVVESERYASGSPVPSEENSNRV 5644
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 394 RTRRVSSCRGRGLRGAGTPRR 332
RTR RGRG RG G PR+
Sbjct: 181 RTRGRGGARGRGGRGRGAPRQ 201
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -3
Query: 394 RTRRVSSCRGRGLRGAGTPRR 332
RTR RGRG RG G PR+
Sbjct: 181 RTRGRGGARGRGGRGRGAPRQ 201
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,639,172
Number of Sequences: 27780
Number of extensions: 256861
Number of successful extensions: 1111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -