Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0443
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.73 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   5.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.8  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    21   9.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   9.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.0  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 136 ESAGDNANWSEDSRVPGESNTG 71
           +S   N  W   SR+ G +NTG
Sbjct: 147 DSTNCNCGWKNPSRIVGGTNTG 168


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 368 GTRAPRSGDTAALRPPPPGP 309
           G  A RSGD A + PP   P
Sbjct: 596 GHSARRSGDVAVIVPPKISP 615


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 263 YTNSPSGLWHRLRSWLGLVEE 325
           YT   S  +  LRSW  L++E
Sbjct: 257 YTRDQSETYDVLRSWRNLMDE 277


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 383 RQLVPGTRAPRSGDTAALRPPPPGPASSATCAIVL 279
           RQ V   R PRS     L PP P P +  +  +++
Sbjct: 34  RQAV-AMRDPRSNRGPVLFPPGPPPNNEDSSGVIV 67


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 98  RVLGPVCIVAGALMTIAGI 154
           R+ GPV  VA A +  AG+
Sbjct: 558 RMSGPVAAVAAAAVAAAGV 576


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 326  PPPPGPASSATCAIV 282
            PPPP P SS    +V
Sbjct: 1356 PPPPPPPSSGQAYLV 1370


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 394 RTRRVSSCRGRGLRGAGTP 338
           RTRRV    GRG    GTP
Sbjct: 2   RTRRVKRSDGRG--NGGTP 18


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 250 EHKKVHQQSIRTMAQVAE 303
           EH+ + + +IRT+AQ  E
Sbjct: 332 EHRTLERHNIRTVAQSDE 349


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 326 PPPPGPASS 300
           PPPP P+SS
Sbjct: 343 PPPPPPSSS 351


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 250 EHKKVHQQSIRTMAQVAE 303
           EH+ + + +IRT+AQ  E
Sbjct: 332 EHRTLERHNIRTVAQSDE 349


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 250 EHKKVHQQSIRTMAQVAE 303
           EH+ + + +IRT+AQ  E
Sbjct: 332 EHRTLERHNIRTVAQSDE 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,888
Number of Sequences: 438
Number of extensions: 3015
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)