Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0443
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    30   1.3  
At5g55450.1 68418.m06907 protease inhibitor/seed storage/lipid t...    28   4.0  
At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger) fa...    28   4.0  
At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger) fa...    28   4.0  
At1g26580.1 68414.m03238 expressed protein similar to putative M...    28   4.0  
At2g28550.1 68415.m03468 AP2 domain-containing transcription fac...    28   5.3  
At1g10950.1 68414.m01257 endomembrane protein 70, putative             27   7.0  
At5g22830.1 68418.m02669 magnesium transporter CorA-like family ...    27   9.3  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    27   9.3  
At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99...    27   9.3  
At1g51810.1 68414.m05839 leucine-rich repeat protein kinase, put...    27   9.3  

>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 380 QLVPGTRAPRSGDTAALRPPPPGPASSA 297
           +L   T AP    + +L PPPP P SSA
Sbjct: 758 ELYASTPAPHPQSSVSLAPPPPKPPSSA 785


>At5g55450.1 68418.m06907 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 104

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 326 PPPPGPASSATCAIVLMDCWCTF 258
           PPPPGP   A   +  + C C +
Sbjct: 53  PPPPGPDCCAVARVANLQCLCPY 75


>At3g09770.2 68416.m01158 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 341

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 GTRAPRSGDTAALRPPPPGPASS 300
           G R  R   TAA  PPPP P+SS
Sbjct: 11  GRRRRRRNHTAAPPPPPPPPSSS 33


>At3g09770.1 68416.m01157 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 388

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 368 GTRAPRSGDTAALRPPPPGPASS 300
           G R  R   TAA  PPPP P+SS
Sbjct: 11  GRRRRRRNHTAAPPPPPPPPSSS 33


>At1g26580.1 68414.m03238 expressed protein similar to putative MYB
           family transcription factor GB:AAD17429 GI:4335752 from
           [Arabidopsis thaliana]
          Length = 493

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 178 GAHQHAQDDACDSHESAGDNANWSE-DSRVPGE 83
           G   + +DD+C S E A +  N +E D  VPGE
Sbjct: 406 GERLNVEDDSCTSFELARNAVNCAEKDETVPGE 438


>At2g28550.1 68415.m03468 AP2 domain-containing transcription factor
           RAP2.7 (RAP2.7) nearly identical to AP2 domain
           transcription factor RAP2.7 (GI:2281639) [Arabidopsis
           thaliana]
          Length = 449

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 353 RSGDTAALRPPPPGP 309
           R G T+A+RP PPGP
Sbjct: 399 RPGQTSAVRPQPPGP 413


>At1g10950.1 68414.m01257 endomembrane protein 70, putative
          Length = 589

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 406 FLIAIRFCCRYGVSTGSSPYPGANIWVHQIFGYIK 510
           F   + FC   G+  G+  Y G+N++V +I+  IK
Sbjct: 553 FGYTMMFCLGLGILCGAVGYLGSNLFVRRIYRNIK 587


>At5g22830.1 68418.m02669 magnesium transporter CorA-like family
           protein weak similarity to SP|Q01926 RNA splicing
           protein MRS2, mitochondrial precursor {Saccharomyces
           cerevisiae}; contains Pfam profile PF01544: CorA-like
           Mg2+ transporter protein; supporting cDNA
           gi|12007446|gb|AF322255.1|AF322255
          Length = 459

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 157 DDACDSHESAGDNANWSEDSRVPGESNTGS 68
           DD  DS+ S GDN    +DS+    S++ S
Sbjct: 87  DDGSDSNSSDGDNGGGRDDSKKIDSSSSSS 116


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 248 QNTRKYTNSPSGLWHRLRSWLG 313
           Q  R Y   P  +W++LRSW G
Sbjct: 113 QEGRDYVLLPQEVWNQLRSWYG 134


>At1g79380.1 68414.m09251 copine-related low similarity to SP|Q99829
           Copine I {Homo sapiens}
          Length = 401

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +1

Query: 430 CRYGVSTGSSPYPGANIWVHQIFGYIKRSGQFPAFAFANSTTFELPTF 573
           C + +   S+PY  A   + Q           P F F +STT +   F
Sbjct: 102 CLHALGETSNPYEKAIFVIGQTLAPFDEDNLIPCFGFGDSTTHDEEVF 149


>At1g51810.1 68414.m05839 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from (Arabidopsis thaliana); contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 843

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = -3

Query: 253 VLRTERIEVAVDRAVECEATLTTLGGAHQHAQDDACDSHESAGD--NANWSEDSRVPGES 80
           VL   +IE  VD  +  +   +T G +    Q D C   +   D  N N S+DS  P  +
Sbjct: 336 VLDFPQIETNVDEVIAIKNIQSTYGLSKTTWQGDPCVPKKFLWDGLNCNNSDDSTPPIIT 395

Query: 79  NTGSVVVGLFVLT 41
           + G  + G+ VLT
Sbjct: 396 SFG--LTGIIVLT 406


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,157,871
Number of Sequences: 28952
Number of extensions: 243476
Number of successful extensions: 953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)