Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0436
         (573 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.8  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   3.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.9  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.9  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/68 (20%), Positives = 26/68 (38%)
 Frame = -2

Query: 278 GGCVGQHAHGALHLGEVSARHHCWGLVIDAHLETSWAPVHELDGSLGFDGCDSRIHVLRH 99
           G    +H + +     +S   H  G+  D+    +W  VH     L   G   ++     
Sbjct: 154 GSVYSRHPYESWPFNTMSGATHHGGIKSDSVTSNAWWDVHSTGSWLDMSGGMHQMANYST 213

Query: 98  NVSSVQHT 75
           + SS+ H+
Sbjct: 214 DYSSLTHS 221


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 422 DYEEVGVDSTEG--ELDEENEY*SGMKNSRSVLGRKEPN 532
           +Y  VG+D       LDEEN+   G     S L  K PN
Sbjct: 56  NYAFVGLDKDCNIQVLDEENDINQGGLKRVSALKEKNPN 94


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 166 GAQLVSRWASITNPQ 210
           GA ++++W ++TN Q
Sbjct: 599 GALMINQWENVTNIQ 613


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +1

Query: 166 GAQLVSRWASITNPQ 210
           GA ++++W ++TN Q
Sbjct: 599 GALMINQWENVTNIQ 613


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 385 ELPPSSIPSPTYQCT 341
           E+PP  +P+P  Q T
Sbjct: 390 EIPPEPVPTPEPQPT 404


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -2

Query: 524 PFGRGHFDCSSSRFNIHFLRPTP 456
           P+G   F+      + H++ PTP
Sbjct: 400 PYGGQMFEAPIPNVSPHYVTPTP 422


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 164 VHELDGSLGFDGCD 123
           VHE+D  L   GCD
Sbjct: 32  VHEVDNQLKQMGCD 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,480
Number of Sequences: 336
Number of extensions: 2999
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)