Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0436
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 233 1e-62
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 229 2e-61
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 95 5e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 5e-08
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 28 0.84
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 27 2.0
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 2.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 27 2.6
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 6.0
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 25 6.0
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 7.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 233 bits (571), Expect = 1e-62
Identities = 99/125 (79%), Positives = 113/125 (90%)
Frame = +3
Query: 3 TNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 182
TN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGF
Sbjct: 296 TNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGF 355
Query: 183 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 362
K+GI Y+PP VPG +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGE
Sbjct: 356 KIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 415
Query: 363 GMEEG 377
GMEEG
Sbjct: 416 GMEEG 420
Score = 52.0 bits (119), Expect = 6e-08
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +2
Query: 380 EFSEAREDLAALEKDYEEVGVDSTEGELDEENE 478
EFSEAREDLAALE+DYEEVG DS + E+ E +E
Sbjct: 421 EFSEAREDLAALERDYEEVGQDSMDNEMYEADE 453
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 229 bits (560), Expect = 2e-61
Identities = 98/125 (78%), Positives = 111/125 (88%)
Frame = +3
Query: 3 TNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 182
TN CFEP NQMVKCDPR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGF
Sbjct: 292 TNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGF 351
Query: 183 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 362
K+GI +PP + G ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGE
Sbjct: 352 KIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGE 411
Query: 363 GMEEG 377
GMEEG
Sbjct: 412 GMEEG 416
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/34 (76%), Positives = 28/34 (82%)
Frame = +2
Query: 380 EFSEAREDLAALEKDYEEVGVDSTEGELDEENEY 481
EFSEAREDLAALE+DYEEVG DS E + EE EY
Sbjct: 417 EFSEAREDLAALERDYEEVGQDSMEVDYMEE-EY 449
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 95.5 bits (227), Expect = 5e-21
Identities = 46/124 (37%), Positives = 70/124 (56%)
Frame = +3
Query: 3 TNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGF 182
T F+ N MV DPRHG+Y+ L+RG V K+V+ I +++TK + FV+W P
Sbjct: 290 TQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNV 349
Query: 183 KVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGE 362
+ PP DL + + + N+T+I E + RL +F M+ ++AF+HWY GE
Sbjct: 350 LKAVCSVPPK-----DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGE 401
Query: 363 GMEE 374
GM+E
Sbjct: 402 GMDE 405
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.4 bits (120), Expect = 5e-08
Identities = 30/119 (25%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Frame = +3
Query: 21 PANQMVKCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGIN 197
P NQMV +P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++
Sbjct: 302 PKNQMVSVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALS 361
Query: 198 YQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE 374
+ P + ++ + ML+N T+IA + R ++D + + AF+ Y E + E
Sbjct: 362 KKSPYIKTNHRVSGL-----MLANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFE 415
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 28.3 bits (60), Expect = 0.84
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = -2
Query: 335 ALSVHQVELV-VQSGPRLGDGGCVGQHAHGALHLGEVSARHHCWGLVIDAHLETSWAPVH 159
A SV VE+V Q+ L DG + H GE + + +++ ++E+ + V
Sbjct: 89 ASSVSPVEIVPYQTDIILEDGTKINLTVLDTPHFGEAIDNENNFDIILQ-YIESQYDNVL 147
Query: 158 ELDGSLGFDG--CDSRIHVLRHNVSSVQH 78
E + + + CD R+H L + +S H
Sbjct: 148 EEESRIKRNARFCDDRVHALIYFISPTGH 176
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/48 (39%), Positives = 27/48 (56%)
Frame = -3
Query: 145 LLVLMVAIAAFTSFGTTSPLYSIQQAMYFP*RGSHFTIWLAGSKHALV 2
LL L+VAI + SFG+ + I AMY + +IW+ G K A+V
Sbjct: 250 LLYLLVAITGYLSFGSLASGNII--AMY-----DNTSIWIIGGKLAIV 290
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 121 LSQPSKP-REPSSSWTGAQLVSRWASITNPQQWCRAE 228
+ QPSK R+P SW+ + WA + + W E
Sbjct: 417 IHQPSKDSRKPVQSWSYVHSLDFWARLLSQAAWLSRE 453
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/70 (22%), Positives = 30/70 (42%)
Frame = -2
Query: 281 DGGCVGQHAHGALHLGEVSARHHCWGLVIDAHLETSWAPVHELDGSLGFDGCDSRIHVLR 102
+G +G+ HG +H +VS + G+ A + W+ + E + G D + +
Sbjct: 40 NGNGLGEKQHGRIHNIKVSLKDDTLGIGAKATNDLEWSGLGEFNAIFGRLNGDESAYGVY 99
Query: 101 HNVSSVQHTT 72
+ VQ T
Sbjct: 100 AEKAKVQQLT 109
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -1
Query: 84 TAYNKPCIFHDAGHISPSGWRARSTRWC 1
T YN P I+ H AR+ +WC
Sbjct: 439 TVYNSPTIYTPNFHYLEGTQPARAAKWC 466
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 6.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 389 EAREDLAALEKDYEEVGVDSTEGELDEENEY*SGMKNSRSVL 514
E DL A D E ++ + ELDEEN Y ++ S S L
Sbjct: 72 EEDPDLEAYLSDLEREELEHSLEELDEENNYKLHLRYSFSQL 113
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 7.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 452 EGELDEENEY*SGMKNSRSVLGRKEPNSY 538
+G + +NEY S KN ++LG +P+ +
Sbjct: 245 KGRVCTQNEYKSDPKNQYNILGAPKPHVF 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,339,666
Number of Sequences: 5004
Number of extensions: 47236
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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