Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0433
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0894 + 7047273-7048277,7049124-7049549 35 0.066
04_03_0897 - 20646750-20646918,20647927-20648038,20649650-206501... 29 4.3
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490... 28 5.7
01_01_0094 - 730484-731570,732030-732715 28 5.7
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377... 28 7.5
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 7.5
05_02_0003 + 5520331-5520476,5520572-5520644,5520762-5520928,552... 28 7.5
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331... 28 7.5
08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821 27 9.9
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 27 9.9
01_01_0097 - 741881-742977,743100-743320,743438-744156 27 9.9
>01_01_0894 + 7047273-7048277,7049124-7049549
Length = 476
Score = 34.7 bits (76), Expect = 0.066
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = -2
Query: 499 GFRLPWPPSCCHERPTPFMVSHERFLGALTLRLVHPTA----PVLLTKIGPLGTVIRSPA 332
G+RLP PPS R PF+ H LG+L R + A PV+L G + TV+ S A
Sbjct: 43 GWRLPLPPS---PRGVPFL-GHLPLLGSLPHRKLRSMAEAHGPVMLLWFGRVPTVVASSA 98
Query: 331 SSFE*AGVLTHLKFENRLR 275
+S + A F +R R
Sbjct: 99 ASAQEAMRARDAAFASRAR 117
>04_03_0897 -
20646750-20646918,20647927-20648038,20649650-20650108,
20650237-20650330,20650449-20650525,20650637-20650688,
20650770-20650927,20651191-20651281,20651465-20652529
Length = 758
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/49 (28%), Positives = 30/49 (61%)
Frame = +2
Query: 5 RRALSHKCWDPKDGELCLVRSKSGETLMEDRSDSDVQIDRRNWV*GRKT 151
R+ ++ + P DG+ +V + SGE D+S ++Q+D+ ++ G+K+
Sbjct: 425 RKIITALSYQP-DGKGFIVGTTSGECRFYDQSGENIQLDKELFMQGKKS 472
>07_03_1231 +
25047067-25047262,25047876-25048045,25048897-25049030,
25049122-25049369,25049799-25049904,25049992-25050130,
25050258-25050385,25050472-25050733
Length = 460
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 375 LPKLAHLAPSSDLRLHRSSKPEFSPI 298
L L +LAP DLR+ SSKP F I
Sbjct: 259 LETLVNLAPVLDLRIFSSSKPSFIKI 284
>01_01_0094 - 730484-731570,732030-732715
Length = 590
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 505 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 410
+ G +LP P C + P P +V RF LT
Sbjct: 552 VDGLQLPSRPFFCDDEPLPLLVDSYRFSSELT 583
>11_01_0489 +
3776563-3776692,3776995-3777073,3777532-3777840,
3778828-3778898,3778975-3779213,3779306-3779383,
3779734-3780156,3780416-3780661,3780886-3780978,
3781480-3781527
Length = 571
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 114 KSIVGTGYRGERLIEPSSSWFRPKFPSG 197
+ + GTG + PSS+WF P+ SG
Sbjct: 12 RCVFGTGPLPPASLSPSSAWFDPELSSG 39
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = -2
Query: 541 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 458
G+LLR + LLS RL P PP CCH R
Sbjct: 63 GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92
>05_02_0003 +
5520331-5520476,5520572-5520644,5520762-5520928,
5520929-5521223,5521531-5521674,5521756-5521890,
5522004-5522093,5523702-5523809,5523905-5523986,
5525362-5525417,5525888-5525986,5526090-5526394,
5526898-5527075,5527167-5527280,5527376-5527507,
5527614-5527718
Length = 742
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 378 RTGAVG*TKRSVKAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVQRLTCRSNQP 542
+TG G KR +KA +K S+D + R QQ G + + + ++Q+ +S P
Sbjct: 267 KTGDFG--KRPIKAMEKLSYDAICSGARCIQQQGNNSNMSRSDALQQYHSKSFNP 319
>01_06_1087 -
34430521-34430899,34432336-34432806,34432926-34433112,
34433470-34433599,34433794-34434125,34434566-34435050,
34435185-34435752,34436579-34436640,34437569-34437636
Length = 893
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -2
Query: 295 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 134
K E LRSF + LP K+ I A++ GN+ GRN GS L L+
Sbjct: 93 KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147
>08_01_0141 - 1115794-1117584,1117803-1117897,1119557-1119821
Length = 716
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 472 CCHERPTPFMVSHERFLGALTLRLVHPTAPVLLTKI 365
C E PF HE ALTL + PTA L+ K+
Sbjct: 324 CIRELAVPFF-HHEVVKRALTLGMESPTAEALIVKL 358
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 291 NFKWVRTPAYSNDEAGDLMTVPSGPILVSRTGA 389
+F W P + N++AG + PS P+ S +G+
Sbjct: 282 SFAWAMIPLFENNQAGGAAS-PSSPLAPSMSGS 313
>01_01_0097 - 741881-742977,743100-743320,743438-744156
Length = 678
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 505 LSGFRLPWPPSCCHERPTPFMVSHERFLGALT 410
+ G +LP P C + P P +V RF LT
Sbjct: 640 VGGLQLPSRPFFCDDEPLPLLVDSCRFSSELT 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,861,193
Number of Sequences: 37544
Number of extensions: 458845
Number of successful extensions: 975
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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