Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0430
         (654 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p pro...   146   3e-35
BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p pro...   144   1e-34
BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p pro...   144   1e-34
AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB...   144   1e-34
AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC...   130   2e-30
BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p pro...   108   7e-24
BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p pro...   108   7e-24
AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA...   108   7e-24
U54982-2|AAC16666.1| 1262|Drosophila melanogaster stn-B protein.       30   3.2  
BT011172-1|AAR88533.1| 1262|Drosophila melanogaster RH38069p pro...    30   3.2  
AE014298-3231|ABI31012.1| 1260|Drosophila melanogaster CG12473-P...    30   3.2  
AE014298-3230|EAA46059.2| 1260|Drosophila melanogaster CG12473-P...    30   3.2  

>BT001880-1|AAN71654.1|  142|Drosophila melanogaster SD12036p
           protein.
          Length = 142

 Score =  146 bits (353), Expect = 3e-35
 Identities = 70/131 (53%), Positives = 89/131 (67%)
 Frame = +3

Query: 54  KMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKT 233
           KM FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT
Sbjct: 12  KMSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKT 71

Query: 234 TEMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMT 413
           + + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T
Sbjct: 72  SAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLT 129

Query: 414 AKDVTCTRVYK 446
             +V C RVYK
Sbjct: 130 IGNVKCVRVYK 140


>BT001835-1|AAN71590.1|  130|Drosophila melanogaster RH49003p
           protein.
          Length = 130

 Score =  144 bits (348), Expect = 1e-34
 Identities = 69/130 (53%), Positives = 88/130 (67%)
 Frame = +3

Query: 57  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 236
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 237 EMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTA 416
            + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T 
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTI 118

Query: 417 KDVTCTRVYK 446
            +V C RVYK
Sbjct: 119 GNVKCVRVYK 128


>BT001757-1|AAN71512.1|  130|Drosophila melanogaster RH06221p
           protein.
          Length = 130

 Score =  144 bits (348), Expect = 1e-34
 Identities = 69/130 (53%), Positives = 88/130 (67%)
 Frame = +3

Query: 57  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 236
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 237 EMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTA 416
            + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T 
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTI 118

Query: 417 KDVTCTRVYK 446
            +V C RVYK
Sbjct: 119 GNVKCVRVYK 128


>AE014297-1319|AAN13512.1|  130|Drosophila melanogaster CG6783-PB,
           isoform B protein.
          Length = 130

 Score =  144 bits (348), Expect = 1e-34
 Identities = 69/130 (53%), Positives = 88/130 (67%)
 Frame = +3

Query: 57  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 236
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 237 EMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTA 416
            + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+   +T 
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTI 118

Query: 417 KDVTCTRVYK 446
            +V C RVYK
Sbjct: 119 GNVKCVRVYK 128


>AE014297-1318|AAN13511.1|  157|Drosophila melanogaster CG6783-PC,
           isoform C protein.
          Length = 157

 Score =  130 bits (313), Expect = 2e-30
 Identities = 62/114 (54%), Positives = 79/114 (69%)
 Frame = +3

Query: 57  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 236
           M FVGKKYK+  SENFDE+MK +GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+
Sbjct: 1   MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTS 60

Query: 237 EMKFKPGEEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEM 398
            + FK G EF+E+  DG  VKS+ T +GN L Q QK       T VREF   E+
Sbjct: 61  AISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDK--PTTIVREFTDNEL 112


>BT012432-1|AAS93703.1|  117|Drosophila melanogaster RH70437p
           protein.
          Length = 117

 Score =  108 bits (259), Expect = 7e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>BT003449-1|AAO39452.1|  117|Drosophila melanogaster RH46282p
           protein.
          Length = 117

 Score =  108 bits (259), Expect = 7e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>AE014297-1320|AAF54655.2|  117|Drosophila melanogaster CG6783-PA,
           isoform A protein.
          Length = 117

 Score =  108 bits (259), Expect = 7e-24
 Identities = 53/109 (48%), Positives = 70/109 (64%)
 Frame = +3

Query: 120 TIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 299
           + GVGL+TRK  N+++PTVE+  +GD Y L T+STFKT+ + FK G EF+E+  DG  VK
Sbjct: 9   SFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAISFKLGVEFDEETLDGRNVK 68

Query: 300 SVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDVTCTRVYK 446
           S+ T +GN L Q QK       T VREF   E+   +T  +V C RVYK
Sbjct: 69  SIITLDGNKLTQEQKGDK--PTTIVREFTDNELITTLTIGNVKCVRVYK 115


>U54982-2|AAC16666.1| 1262|Drosophila melanogaster stn-B protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 506 RDVRESAAPTPDLGIESLLDL-VDSGAS 426
           RD+  S +PTPD G+  LLD+ VDSG+S
Sbjct: 162 RDLH-SPSPTPDSGLADLLDVSVDSGSS 188


>BT011172-1|AAR88533.1| 1262|Drosophila melanogaster RH38069p
           protein.
          Length = 1262

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 506 RDVRESAAPTPDLGIESLLDL-VDSGAS 426
           RD+  S +PTPD G+  LLD+ VDSG+S
Sbjct: 162 RDLH-SPSPTPDSGLADLLDVSVDSGSS 188


>AE014298-3231|ABI31012.1| 1260|Drosophila melanogaster CG12473-PB,
           isoform B protein.
          Length = 1260

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 506 RDVRESAAPTPDLGIESLLDL-VDSGAS 426
           RD+  S +PTPD G+  LLD+ VDSG+S
Sbjct: 162 RDLH-SPSPTPDSGLADLLDVSVDSGSS 188


>AE014298-3230|EAA46059.2| 1260|Drosophila melanogaster CG12473-PA,
           isoform A protein.
          Length = 1260

 Score = 29.9 bits (64), Expect = 3.2
 Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = -2

Query: 506 RDVRESAAPTPDLGIESLLDL-VDSGAS 426
           RD+  S +PTPD G+  LLD+ VDSG+S
Sbjct: 162 RDLH-SPSPTPDSGLADLLDVSVDSGSS 188


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,747,666
Number of Sequences: 53049
Number of extensions: 565922
Number of successful extensions: 1602
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)