Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0430
         (654 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    30   1.2  
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   4.7  
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)...    28   6.2  
At5g64260.1 68418.m08073 phosphate-responsive protein, putative ...    27   8.2  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   8.2  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   8.2  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   8.2  

>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = +3

Query: 351 DGLEVTYVREFGPEEMKAVMTAKDVTCTRVYKVQ*GLYSEVGSRCRRFTNIPRHNYVYLA 530
           D + V+Y++E GP   ++V T   + C++  +++   Y   G +   FT       V+L 
Sbjct: 22  DIILVSYIQEHGPGNWRSVPTHTGLRCSKSCRLRWTNYLRPGIKRGNFTEHEEKTIVHLQ 81

Query: 531 SIL 539
           ++L
Sbjct: 82  ALL 84


>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 129 VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 287
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
           identical to myb-like protein GB:AJ007289 [Arabidopsis
           thaliana] (Plant J. 20 (1), 57-66 (1999))
          Length = 323

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 351 DGLEVTYVREFGPEEMKAVMTAKD-VTCTRVYKVQ*GLYSEVGSRCRRFTNIPRHNYVYL 527
           D + VTY++E GP   +AV T    + C++  +++   Y   G +   FT       V+L
Sbjct: 22  DIILVTYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIVHL 81

Query: 528 ASIL 539
            ++L
Sbjct: 82  QALL 85


>At5g64260.1 68418.m08073 phosphate-responsive protein, putative
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 305

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 384 GPEEMKAVMTAKDVTCTRVYKVQ*GLYSEVGSRCRRFTN 500
           G   +  V+TAKDVT  R    + G +   GS  RR  N
Sbjct: 133 GLRSITVVLTAKDVTVERFCMSRCGTHGSSGSNPRRAAN 171


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 81  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 194
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 188
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 188
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,750
Number of Sequences: 28952
Number of extensions: 267714
Number of successful extensions: 759
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)