Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0429
         (530 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.078
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.31 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   2.2  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.9  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.5 bits (58), Expect = 0.078
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +2

Query: 212 EKKEGGSEVKNEPMEVEESDAKVK-EEPSEQAPPEDKDAKDEPAS-PQPSKPQ 364
           E  E GS  + + +E +E    +     +  APPE++ A   P   P PS P+
Sbjct: 15  EGGEEGSPEEGDKLEGDEDTGSMTPNSAASPAPPEEEAASPTPGDVPTPSSPR 67


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +2

Query: 203 PTGEKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQP 352
           P G    G  +   +P  V++ D   +E+P+     +D  +  E   P+P
Sbjct: 62  PIGFVAGGVQQAGKKPENVKKEDESDEEKPTTSFKLKDSSSDSEDERPRP 111


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 215 KKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPAS 343
           K+E  S  ++ P+  E+        P+   PPE++    + AS
Sbjct: 74  KREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDAS 116


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +2

Query: 275 KVKEEPSEQAPPEDKDAKDEPASPQPS 355
           K    P E+    D   ++EP  P+P+
Sbjct: 309 KTNIAPRERPRATDHQRRNEPKRPRPN 335


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,968
Number of Sequences: 336
Number of extensions: 615
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)