Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0429
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    31   0.14 
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    30   0.19 
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    30   0.25 
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    30   0.25 
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    28   1.00 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.00 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    27   1.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.3  
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.0  
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   4.0  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    25   5.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   5.3  
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    25   9.3  

>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = +2

Query: 200 EPTGEKKEGGSEVKNEPMEVEESDAK------VKEEPSEQAPPEDKDAKDEPASPQPSKP 361
           E T EKKEG SE  ++     +S ++        +  SE +  ++K  K EPAS +  +P
Sbjct: 192 EKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPASEE--RP 249

Query: 362 QLLWTPS 382
             +  PS
Sbjct: 250 AKITKPS 256


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 206 TGEKKEGGSEVKNEP-MEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQPSKPQ 364
           T E K G  EVK E  ++ E+ ++KVK E  E+    +  +     SP   +PQ
Sbjct: 147 TVETKPGEPEVKQETNLQKEKKESKVKLESKEEKISRNLRSSSRSISPVTEQPQ 200


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 206 TGEKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQPSK 358
           T E  EG  E      E EE+D   +EE +E+    D+D ++   S   +K
Sbjct: 678 TSESSEGEYETSTSESEDEETDDTSQEEDNEKNSTPDEDTENNNTSSISTK 728


>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +2

Query: 212 EKKEG---GSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDE 334
           EKKE      EVK EP + EE + K  +EP E+ P E+ +   E
Sbjct: 90  EKKETIQPPEEVKTEPPQPEEKEGKEAKEP-EEPPKEEAEEPQE 132


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 233 EVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDE 334
           ++    +E E+ +A  KEE  E+   +DKD K++
Sbjct: 168 DIMKRKLETEKLEANNKEEKEEKEGKDDKDDKED 201


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.9 bits (59), Expect = 1.00
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 EKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDE 334
           +KKE    V+      EE+DA  +EE  E+   ED++ +DE
Sbjct: 92  DKKEDEDNVEENE---EEADANEEEEEDEEDDEEDEEDEDE 129


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 260  EESDAKVKEEPSEQAPPEDKDAKDEPASPQPSKPQLLWTPSCS 388
            E+ + K K+  S++   E+KD  + P++    + QLL +P+ S
Sbjct: 1398 EDEEPKRKKSKSDRFDDEEKDLDEIPSTAADFERQLLSSPNSS 1440


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 212 EKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKD----EPASPQPS 355
           ++   GSE      +V+E + +  +E +++   ED++  D    E  SP PS
Sbjct: 235 DESSSGSESYERDEDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPS 286


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 269 DAKVKEEPSEQAPPEDKDAKDE 334
           D+++ +E  E  PPE+KD K E
Sbjct: 65  DSEIIKESDESWPPENKDGKQE 86


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 224 GGSEVKNEPMEVEESDAKVKEEPSE-QAPPEDKDAKDEPASPQPSKPQLLWTPSCS 388
           G S  K+   E E+   K +E     +   ED+    +PA P+ ++P L   PS S
Sbjct: 725 GHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPESTRPALA-PPSSS 779



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +2

Query: 287  EPSEQ--APPEDKDAKDEPASPQPSKP 361
            EP EQ  AP E KDA+    +P P++P
Sbjct: 989  EPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 215 KKEGGSEVKNEPMEVEESDAKVK-EEPSEQAPPED 316
           K+ GG+E   E +E  ESD +++ EEP+ + P +D
Sbjct: 78  KELGGTEEDLELIEDVESDEELEFEEPNRKQPKKD 112


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 260 EESDAKVKEEPSEQAPPEDKDAKDEPASPQP 352
           +E +  +  EPS+  P E +D  D P +  P
Sbjct: 503 KEEERPLPSEPSQNQPAEYRDTPDTPRNIMP 533



 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 290  PSEQAPPEDKDAKDEPASPQPSKPQLLWTPS 382
            P  +APP  K +   P  P PS    + TPS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +2

Query: 260 EESDAKVKEEPSEQAPPEDKDAKDEPASPQPSK 358
           EESD  +K  PS  APP DKD+   P +  P K
Sbjct: 74  EESDPNLKL-PSFLAPPNDKDS---PVNQSPWK 102


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 203 PTGEKKEGGSEVKNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQPSK 358
           P+ EK     + +NE  E    D  V ++P EQ  PE+++   +  +  P+K
Sbjct: 27  PSNEKNFSTEKSENEASESHVVD--VVKDPFEQYTPEEQEILYKQINDTPAK 76


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 278 VKEEPSEQAPPEDKDAKDEPASPQ-PSKPQLLWTPS 382
           V E PS   PP    A + P++PQ P+ P +   PS
Sbjct: 523 VPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPS 558


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 239 KNEPMEVEESDAKVKEEPSEQAPPEDKDAKDEPASPQPSKPQLLWTP 379
           + E  +V+  D K  EE  E    ED++  DE       K +   TP
Sbjct: 43  EKEDEDVDAVDEKSGEEDVEMDTMEDENENDEDTEQTSEKKETEETP 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 989,622
Number of Sequences: 5004
Number of extensions: 11714
Number of successful extensions: 121
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)