Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0429
         (530 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    25   2.1  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    24   2.8  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   6.4  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    23   6.4  

>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 7/37 (18%), Positives = 20/37 (54%)
 Frame = +2

Query: 260 EESDAKVKEEPSEQAPPEDKDAKDEPASPQPSKPQLL 370
           ++   + ++ P +Q P + +  +      +P+KP+L+
Sbjct: 463 QQPQQQQQQRPQQQRPQQQRPQQQRSQQRKPAKPELI 499


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +2

Query: 254  EVEESDAKVKEEPSEQAPPEDKDAK----DEPASPQPSK 358
            ++++ D    E+P  + PPE  D      D+ ++P P +
Sbjct: 1062 DIDDEDTYDYEQPDYELPPEHSDVTTPDYDQRSTPTPQR 1100


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 206  TGEKKEGGSEVKNE-PMEVEESDAKVKEEPSEQAPPED--KDAKDEPASPQPSK 358
            T E + GGS   +  P  +      ++E   +  PP    + A+  PASP PSK
Sbjct: 1417 TDEPRPGGSGGGHTGPAGLISRWRDMEEGGRQSTPPASPARLARSSPASPTPSK 1470


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 528 QNAKFNFQFLHLRFDEE 478
           Q  +  F+FLH++ DE+
Sbjct: 239 QRGRLPFKFLHIKLDED 255


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,391
Number of Sequences: 2352
Number of extensions: 2580
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49051644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)