Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0429
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.84 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   2.6  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.84
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 287 EPSEQAPPEDKDAKDEPASPQPSKPQLLWTPSCSXXXXXXXXXXXXKPNIS 439
           EP+++A  +  DA+ E  +    KPQ+ W  +               P+IS
Sbjct: 684 EPTDKAFAQGSDARVECKADGFPKPQVTWKKAAGDTPGDYTDLKLSNPDIS 734


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6
          variant 2 precursor protein.
          Length = 94

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 70 GFGGFGRDAGVDDRGQ 23
          GFGGFG   G+  RG+
Sbjct: 21 GFGGFGGFGGLGGRGK 36


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6
          variant 1 precursor protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 70 GFGGFGRDAGVDDRGQ 23
          GFGGFG   G+  RG+
Sbjct: 21 GFGGFGGFGGLGGRGK 36


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +2

Query: 257 VEESDAKV-KEEPSEQ---APPEDKDAKDEPASPQPSKPQLLWT 376
           VE+S+  V K + SE+      ++K+ +D+ A+P+ + PQL  T
Sbjct: 193 VEKSELWVYKSKASEEHGNKKKKNKEDEDDGATPRKAPPQLSTT 236


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 94  DSSKFIHRGFGGFGR 50
           D SKF +RG G F R
Sbjct: 98  DFSKFANRGLGVFER 112


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)
 Frame = +2

Query: 284 EEPSEQAPPEDKDAKDEPASPQPSKP 361
           ++PS  AP         P +PQ   P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSP 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,117
Number of Sequences: 438
Number of extensions: 841
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)