Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0428
         (722 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   1e-43
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                 120   1e-27
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   93   3e-19
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              52   5e-07
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              50   2e-06
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   1e-05
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      47   1e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                43   2e-04
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            41   9e-04
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)                   31   1.2  
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)                     29   5.0  
SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)            29   5.0  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   6.7  
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score =  173 bits (421), Expect = 1e-43
 Identities = 80/137 (58%), Positives = 107/137 (78%)
 Frame = +1

Query: 250 QIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIAR 429
           QIQHPTASLIAR                V++IGELLKQAD+++SEGLHPR++TEGF++A+
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAK 229

Query: 430 NKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVD 609
            K+LEVLE +K+  E+ R+ L++VA+TSL+TKV   LAD+LT+  VDAVLTIR P KP+D
Sbjct: 230 KKALEVLEEVKVSREMDRDTLINVAKTSLRTKVRTELADLLTEVVVDAVLTIRKPKKPID 289

Query: 610 LHMVEIMEMKHKTATET 660
           LHMVE+MEM+HKT +++
Sbjct: 290 LHMVEVMEMRHKTDSDS 306



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +1

Query: 49  MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAG 204
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTMK+L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score =  120 bits (289), Expect = 1e-27
 Identities = 67/205 (32%), Positives = 113/205 (55%), Gaps = 4/205 (1%)
 Frame = +1

Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 294
           +I AA+ +  ++KT+LGPKG  KM+VS  G++ +T DG  +L  M++ H  A L+     
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSK 94

Query: 295 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM--KIP 468
                        V+L G LL+ A+  +  G+HP  I +G+++A   +LE ++S+    P
Sbjct: 95  SQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDSIADNFP 154

Query: 469 IE-IARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEIMEMKH 642
           ++   +E+L+  A T+L +K+       L +  VDAVL++     K VD  ++++   + 
Sbjct: 155 VDKDNKESLIQTAMTTLGSKIVSRCHRPLAEIAVDAVLSVADLERKDVDFELIKVEGKEG 214

Query: 643 KTATETVLVKGLVMDHGARHPDMPK 717
               +TVLVKG+V+D    HP MPK
Sbjct: 215 GKLDDTVLVKGVVVDKDMSHPQMPK 239


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 64/216 (29%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
 Frame = +1

Query: 58  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGA--GDIKITKDGN 231
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  K+L S    G+I++T DG 
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65

Query: 232 VLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITE 411
            +L  + I +P A ++                   +L  ELLK+A+  +S  +HP+ I  
Sbjct: 66  TILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVA 125

Query: 412 GFDIARNKSLEVLESMKI----PIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVL 579
           G+  +   + + LE+  +      E  RE+L+++ART+L +K+     D      VDAVL
Sbjct: 126 GWRKSVKAAEKALEAAAVDHSSDPEKFREDLMNIARTTLSSKILVQHRDHFAKLAVDAVL 185

Query: 580 TIRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMD 687
            ++  G   DL+ ++I++       ++ L +G ++D
Sbjct: 186 RLKGSG---DLNAIQIIKKLGGGMVDSFLDEGFLLD 218


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/74 (33%), Positives = 40/74 (54%)
 Frame = +1

Query: 58  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 237
           I LL    + ++    L  NI A + I D ++T LGP+G  K++V G G   I+ DG  +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700

Query: 238 LHEMQIQHPTASLI 279
           ++ + I HP A  +
Sbjct: 701 INLLDIVHPAAKTL 714


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 228
           NI+AAK + D ++T+LGPKG  KM+  G GD+ IT DG
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = +1

Query: 214 ITKDGNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLH 393
           +T DGN +L E+Q++HP A  +                  ++L GE +  A+ F+ + +H
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60

Query: 394 PRIITEGFDIARNKSLEVLE 453
           P  I   + +A +  +++L+
Sbjct: 61  PTQIIAAYRLAMDDMIDILK 80


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
 Frame = +1

Query: 337 LLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPI----EIARENLVDVA 504
           +L  ELLK+A+  +S  +HP+ I  G+  +   + + LE+  +      E  R++L+++A
Sbjct: 19  VLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVDHSSDPEKFRDDLMNIA 78

Query: 505 RTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVEIME 633
           RT+L +K+     D      VDAVL ++  G   DL+ ++I++
Sbjct: 79  RTTLSSKILVQHRDHFAKLAVDAVLRLKGSG---DLNAIQIIK 118


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 10/155 (6%)
 Frame = +1

Query: 70  NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEM 249
           N   E    A+A A  +     + D +   LGPKG   ++    G  KITKDG  +   +
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAI 116

Query: 250 QI----QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITE-- 411
           ++    Q+  A L+                   +L   +  +  + +S+G +P+ ++   
Sbjct: 117 ELKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEVSSLE 176

Query: 412 ---GFDIARNKSLEVLESMKI-PIEIARENLVDVA 504
              G+D A N  ++++++  I P ++ R  + D A
Sbjct: 177 NAMGYDAANNTYVDMIQAGIIDPTKVVRTAITDAA 211


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 18/85 (21%), Positives = 40/85 (47%)
 Frame = +1

Query: 109 AVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARX 288
           A  +   +  + ++K + GP G   ML S +G+I IT  G+++L  + + +PT  +I   
Sbjct: 3   AAALQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEA 62

Query: 289 XXXXXXXXXXXXXXXVLLIGELLKQ 363
                          ++++ E+ ++
Sbjct: 63  ARSLSGRTGSGASYFIIILAEIFRE 87


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = +1

Query: 226 GNVLLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRII 405
           GNV   ++Q++HP A  +                  ++L GE +  A+ F+ + +HP  I
Sbjct: 202 GNVQAAKIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQI 261

Query: 406 TEGFDIARNKSLEVLE 453
              + +A +  +++L+
Sbjct: 262 IAAYRLAMDDMIDILK 277


>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1050

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 207 HKDHQGWQCFVT*DANPAPYSLTDCSSVNRSR*CHWRWYNIYC 335
           H+D  G  C V  ++N + ++   C+    +R CH  WY  YC
Sbjct: 699 HRDWYGPFCDVNCNSNSSHFT---CNKTTGARVCHSNWYGTYC 738


>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
          Length = 651

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +1

Query: 64  LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLL 240
           +LN  A+F  + + +    S  +G   V +  LG   T  +  +GAG + + K G V+L
Sbjct: 64  VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVML 122


>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
          Length = 349

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 550 LTDACVDAVLTIRT--PGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGAR 699
           LT    D +L +R+  PG+ V+ HM++ ++ K  T  E +    L   H +R
Sbjct: 124 LTPDVNDHMLQVRSHAPGERVNDHMLQTLQTKDTTLQEAITTATLARSHYSR 175


>SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)
          Length = 483

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 720 TLWHIWVTCTMIHY*TFYKYSFSSRLVFHL 631
           TLW  W    +I    FY Y F   LVFHL
Sbjct: 334 TLWKTW----LIRIGLFYSYGFLGALVFHL 359


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 207  HKDHQGWQCFVT*DANPAPYSLTDCSSVNRSR*CHWRWYNIYCPPHWRA 353
            H D  G  C V   A  +      C +   S+ CH  WY   C  + +A
Sbjct: 1031 HPDWFGENCTVHCKAQSSDNQNYSCDNATGSKICHSNWYGENCTVYCKA 1079


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 261 VLDLHLM*QNIAILGDLYVPSTRNQHFHRAF 169
           V DL  + +    LGD+Y+P  RN H  R F
Sbjct: 29  VEDLKQVFKKYGDLGDIYIPRDRNTHESRGF 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,631,922
Number of Sequences: 59808
Number of extensions: 425966
Number of successful extensions: 1104
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)