Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0428
(722 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 242 1e-64
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 241 2e-64
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 128 3e-30
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 106 2e-23
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 100 1e-21
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 99 3e-21
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 79 3e-15
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 79 4e-15
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 77 9e-15
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 63 2e-10
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 47 1e-05
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 45 4e-05
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 45 4e-05
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 42 3e-04
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 38 0.009
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 36 0.021
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 35 0.047
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 34 0.11
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.14
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.8
At1g20740.1 68414.m02598 expressed protein ; expression supporte... 29 2.4
At4g25160.1 68417.m03622 protein kinase family protein contains ... 29 3.1
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 4.1
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 29 4.1
At5g40780.2 68418.m04951 lysine and histidine specific transport... 27 9.5
At5g40780.1 68418.m04950 lysine and histidine specific transport... 27 9.5
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 242 bits (593), Expect = 1e-64
Identities = 119/226 (52%), Positives = 163/226 (72%), Gaps = 4/226 (1%)
Frame = +1
Query: 55 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 234
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 235 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 414
LL EMQIQ+PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +G
Sbjct: 62 LLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDG 121
Query: 415 FDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLT 582
F+IA+ +L+ L++ K P+ E +E L VART+L+TK++ LAD LTD V++VL
Sbjct: 122 FEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLC 181
Query: 583 IRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKR 720
IR P +P+DL MVEIM M+HK +T LV+GLV+DHG+RHPDM +R
Sbjct: 182 IRKPQEPIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRR 227
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 241 bits (591), Expect = 2e-64
Identities = 118/226 (52%), Positives = 163/226 (72%), Gaps = 4/226 (1%)
Frame = +1
Query: 55 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 234
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 235 LLHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEG 414
LL EMQIQ+PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +G
Sbjct: 62 LLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDG 121
Query: 415 FDIARNKSLEVLESMKIPI----EIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLT 582
F+IA+ +L+ L++ K P+ E+ +E L VART+L+TK++ LAD LTD V++VL
Sbjct: 122 FEIAKRATLQFLDNFKTPVVMGDEVDKEILKMVARTTLRTKLYEGLADQLTDIVVNSVLC 181
Query: 583 IRTPGKPVDLHMVEIMEMKHKTATETVLVKGLVMDHGARHPDMPKR 720
IR P + +DL MVEIM M+HK +T LV+GLV+DHG+RHPDM +R
Sbjct: 182 IRKPEEAIDLFMVEIMHMRHKFDVDTRLVEGLVLDHGSRHPDMKRR 227
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 128 bits (310), Expect = 3e-30
Identities = 66/194 (34%), Positives = 113/194 (58%), Gaps = 3/194 (1%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 294
NI++A+ + D ++T+LGPKG KM+ + G++ IT DG +L++M++ P A ++
Sbjct: 33 NINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSK 92
Query: 295 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 474
V++ G LLK+ ++ G+HP +I++ A K++++L +M +P+E
Sbjct: 93 SQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVE 152
Query: 475 IA-RENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKP--VDLHMVEIMEMKHK 645
+ R++LV A TSL +KV + +L VDAVL++ P KP VDL ++I++
Sbjct: 153 LTDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEIVDLRDIKIVKKLGG 212
Query: 646 TATETVLVKGLVMD 687
T +T VKGLV D
Sbjct: 213 TVDDTHTVKGLVFD 226
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 106 bits (254), Expect = 2e-23
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 4/214 (1%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTA 270
R A NI+A K + +++++LGPKG KML GDI IT DG +L +M + + A
Sbjct: 25 RGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIA 84
Query: 271 SLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVL 450
L+ V++ G LL+QA+ + G+HP I EG+++A ++E L
Sbjct: 85 KLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHL 144
Query: 451 E--SMKIPIEIAR-ENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHM 618
E + K ++ E LV T+L +K+ L + V AVL + + V+L +
Sbjct: 145 ERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDL 204
Query: 619 VEIMEMKHKTATETVLVKGLVMDHGARHPDMPKR 720
+++ +T L+ G+++D HP MPK+
Sbjct: 205 IKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQ 238
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 100 bits (239), Expect = 1e-21
Identities = 54/208 (25%), Positives = 109/208 (52%), Gaps = 6/208 (2%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 294
N+ A + + +++KT+LGP G KMLV GD+ IT DG +L ++++HP A ++
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAE 83
Query: 295 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKI-PI 471
V++ ELLK+A+ + +HP I G+ +A +S + +E + +
Sbjct: 84 LQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKV 143
Query: 472 E-IARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHM----VEIMEM 636
E + + L++ A+TS+ +K+ +D + V+AVL+++ + ++ + I++
Sbjct: 144 EKLGKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSVKMTNQRGEIKYPIKGINILKA 203
Query: 637 KHKTATETVLVKGLVMDHGARHPDMPKR 720
++A ++ L+ G ++ G MP R
Sbjct: 204 HGQSARDSYLLNGYALNTGRAAQGMPLR 231
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARXXX 294
NI A+K + D+++T LGP+ +KML+ G I +T DGN +L E+ + HP A +
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSR 83
Query: 295 XXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIE 474
++L GE+L A+ F+ + HP +I + A S+ VL+ + + I+
Sbjct: 84 TQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDSIAVLDKIAMSID 143
Query: 475 I-ARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTI 585
I R ++ + ++ + TK D++ D +DA T+
Sbjct: 144 INDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 181
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 79.0 bits (186), Expect = 3e-15
Identities = 51/209 (24%), Positives = 102/209 (48%), Gaps = 10/209 (4%)
Frame = +1
Query: 100 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPTASLI 279
+A+ NI A K + + +T+LGP G KM+++ + +T D +++E++IQHP A L+
Sbjct: 27 EAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLL 86
Query: 280 ARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESM 459
+ GELL+ A+ I GLHP I G+ A +K++E+LE +
Sbjct: 87 VLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQL 146
Query: 460 ----KIPIEIA-RENLVDVARTSLKTK---VHPSLADVLTDACVDAVLTIRTPGKPVDLH 615
+++ ++ ++ R ++ +K + ++TDAC+ P P + +
Sbjct: 147 VETGSETMDVRNKDEVISRMRAAVASKQFGQEEIICSLVTDACIQV-----CPKNPTNFN 201
Query: 616 M--VEIMEMKHKTATETVLVKGLVMDHGA 696
+ V + ++ + +V+G+V+ A
Sbjct: 202 VDNVRVSKLLGGGLHNSCIVRGMVLKSDA 230
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 78.6 bits (185), Expect = 4e-15
Identities = 54/205 (26%), Positives = 100/205 (48%), Gaps = 6/205 (2%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVS-GAGD-IKITKDGNVLLHEMQIQHP 264
+ +A + A I D++K+ LGPKG K+L S G G + +T DG +L + I +P
Sbjct: 15 KGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNP 74
Query: 265 TASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF----DIARN 432
A ++ V+L GELL++A+ ++ +HP I G+ + ARN
Sbjct: 75 AAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMASECARN 134
Query: 433 KSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDL 612
L+ + K E R +L+ +A T+L +K+ + + VDAV ++ +L
Sbjct: 135 ALLKRVIDNKDNAEKFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDAVFRLK---GSTNL 191
Query: 613 HMVEIMEMKHKTATETVLVKGLVMD 687
++I++ + ++ L +G ++D
Sbjct: 192 EAIQIIKKPGGSLKDSFLDEGFILD 216
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 77.4 bits (182), Expect = 9e-15
Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 5/212 (2%)
Frame = +1
Query: 58 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 237
I LL + ++ L NI+A + DV++T LGP+G K++ G + I+ DG +
Sbjct: 9 IILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATI 68
Query: 238 LHEMQIQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGF 417
+ + I HP A ++ VLL E LK+A FI +G+H + + +
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSY 128
Query: 418 DIARNKSLEVLESMKIPIE--IAREN---LVDVARTSLKTKVHPSLADVLTDACVDAVLT 582
A ++ ++ + + IE E L A T+L +K+ + VDAV+
Sbjct: 129 RTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFATMVVDAVMA 188
Query: 583 IRTPGKPVDLHMVEIMEMKHKTATETVLVKGL 678
I G L+++ I ++ ++ LV G+
Sbjct: 189 I---GNDDRLNLIGIKKVPGGNMRDSFLVDGV 217
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/133 (29%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Frame = +1
Query: 334 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLE--SMKIPIEIAR-ENLVDVA 504
V++ G LL+QA+ + G+HP I EG+++A ++E LE + K ++ E LV
Sbjct: 30 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTC 89
Query: 505 RTSLKTKVHPSLADVLTDACVDAVLTIR-TPGKPVDLHMVEIMEMKHKTATETVLVKGLV 681
T+L +K+ L + V AVL + + V+L ++++ +T L+ G++
Sbjct: 90 MTTLSSKIVNRCKRSLAEIAVKAVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGIL 149
Query: 682 MDHGARHPDMPKR 720
+D HP MPK+
Sbjct: 150 IDKDMSHPQMPKQ 162
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 46.8 bits (106), Expect = 1e-05
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARXXXXXX 303
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 304 XXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIAR 483
V+L L+ + ++ G +P +IT G + K+L V E K+ E+
Sbjct: 134 DLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIE-KTTKAL-VAELKKMSKEVED 191
Query: 484 ENLVDVARTSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 633
L DVA S +V +A+ + V+T+ GK + L++VE M+
Sbjct: 192 SELADVAAVSAGNNYEVGNMIAEAMAKVGRKGVVTLE-EGKSAENSLYVVEGMQ 244
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 45.2 bits (102), Expect = 4e-05
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 8/174 (4%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARXXXXXX 303
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 304 XXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIAR 483
V+L + + ++ G +P +IT G I + V E K+ E+
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG--IEKTAKALVTELKKMSKEVED 195
Query: 484 ENLVDVARTSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 633
L DVA S ++ +A+ ++ V+T+ GK + L++VE M+
Sbjct: 196 SELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 248
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 45.2 bits (102), Expect = 4e-05
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 8/174 (4%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARXXXXXX 303
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 304 XXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIAR 483
V+L + + ++ G +P +IT G I + V E K+ E+
Sbjct: 138 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG--IEKTAKALVTELKKMSKEVED 195
Query: 484 ENLVDVARTSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 633
L DVA S ++ +A+ ++ V+T+ GK + L++VE M+
Sbjct: 196 SELADVAAVSAGNNDEIGNMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 248
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 42.3 bits (95), Expect = 3e-04
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARXXXXXX 303
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 304 XXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIPIEIAR 483
V+L + + ++ G +P +IT G + + L+ M E+
Sbjct: 134 DLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNELKLMS--KEVED 191
Query: 484 ENLVDVARTSL--KTKVHPSLADVLTDACVDAVLTIRTPGKPVD--LHMVEIME 633
L DVA S +V +A+ ++ V+T+ GK + L++VE M+
Sbjct: 192 SELADVAAVSAGNNHEVGSMIAEAMSKVGRKGVVTLE-EGKSAENNLYVVEGMQ 244
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 37.5 bits (83), Expect = 0.009
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Frame = +1
Query: 121 SAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARX 288
+ A + ++ LGPKG +L + G +I DG +L E++++ P L+ +
Sbjct: 57 AGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQA 116
Query: 289 XXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKIP 468
++L L+ + IS G +P + G + K+L VLE +
Sbjct: 117 GAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARGIE-KTTKAL-VLELKSMS 174
Query: 469 IEIARENLVDVARTS 513
EI L VA S
Sbjct: 175 REIEDHELAHVAAVS 189
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 36.3 bits (80), Expect = 0.021
Identities = 38/192 (19%), Positives = 82/192 (42%), Gaps = 7/192 (3%)
Frame = +1
Query: 82 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ--- 252
E +A A+ + + + D +K +GPKG ++ G K+TKDG + ++
Sbjct: 35 EIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKD 94
Query: 253 -IQHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIAR 429
I++ ASL+ + +L + + ++ G++ + G +A
Sbjct: 95 KIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAV 154
Query: 430 NKSLEVLESMKIPIEIARE-NLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPV 606
+ + L+S I + E V + + ++ +A + + V+TI+ GK +
Sbjct: 155 DAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQ-DGKTL 213
Query: 607 --DLHMVEIMEM 636
+L +VE M++
Sbjct: 214 FNELEVVEGMKL 225
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 35.1 bits (77), Expect = 0.047
Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Frame = +1
Query: 100 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQ----IQHPT 267
+A A+ + + + D +K +GPKG ++ G K+TKDG + ++ I++
Sbjct: 42 EARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVG 101
Query: 268 ASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEV 447
ASL+ + +L + + ++ G++ + G +A + +
Sbjct: 102 ASLVKQVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVDTVVTN 161
Query: 448 LESMKIPIEIARENLVDVARTSLK--TKVHPSLADVLTDACVDAVLTIRTPGKPV--DLH 615
L+S I + E + V S ++ +A + + V+TI+ GK + +L
Sbjct: 162 LQSRARMISTS-EEIAQVGTISANGDREIGELIAKAMETVGKEGVITIQ-DGKTLFNELE 219
Query: 616 MVEIMEM 636
+VE M++
Sbjct: 220 VVEGMKI 226
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 33.9 bits (74), Expect = 0.11
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 613 ADQQVCLEFEW*VPHQRKHQLAHLPSLG 530
+ + +CL ++ PH +KH+ HLPS+G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 103 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIQ 258
A A + + + +K +GPKG ++ S G KITKDG + + Q
Sbjct: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQ 93
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMK 183
+ A NISA K + +++++LGPKG K
Sbjct: 25 KGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At1g20740.1 68414.m02598 expressed protein ; expression supported
by MPSS
Length = 266
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 415 FDIARNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDA 561
F+ A +++LE LES + P + A+ + D R H +AD+ +++
Sbjct: 85 FNGAESRTLEFLESNESPEDFAKSSAADYIRNKNTAAFHLIVADIASNS 133
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 29.1 bits (62), Expect = 3.1
Identities = 22/78 (28%), Positives = 35/78 (44%)
Frame = +1
Query: 427 RNKSLEVLESMKIPIEIARENLVDVARTSLKTKVHPSLADVLTDACVDAVLTIRTPGKPV 606
+++ L LE++K E AR + V+ + P L DV+ + CV A G
Sbjct: 738 KDQILPALENLKKVAEKARNSFSGVSTQPPTHFICPLLKDVMNEPCVAA------DGYTY 791
Query: 607 DLHMVEIMEMKHKTATET 660
D H +E +H T+ T
Sbjct: 792 DRHAIEEWLKEHNTSPMT 809
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -3
Query: 147 YILNSFSCGYIYSKCLCSTSELGF 76
+I+ S+ G +Y C C +S+LG+
Sbjct: 630 FIMKSYDGGEVYCSCYCVSSQLGY 653
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 446 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSP 345
TS+ L+ + K + IL C P L N A SS+P
Sbjct: 628 TSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAP 661
>At5g40780.2 68418.m04951 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 445
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 43 NEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPK---GTMKMLVSGAGDIK 213
N ++ +SL A + + +A SA+KG+Q+ ++ K GT+ SG GD+
Sbjct: 178 NSISGVSLA--AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVA 235
Query: 214 ITKDGNVLLHEMQIQHPT 267
G+ ++ E+Q P+
Sbjct: 236 FAYAGHNVVLEIQATIPS 253
>At5g40780.1 68418.m04950 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 446
Score = 27.5 bits (58), Expect = 9.5
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +1
Query: 43 NEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPK---GTMKMLVSGAGDIK 213
N ++ +SL A + + +A SA+KG+Q+ ++ K GT+ SG GD+
Sbjct: 179 NSISGVSLA--AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVA 236
Query: 214 ITKDGNVLLHEMQIQHPT 267
G+ ++ E+Q P+
Sbjct: 237 FAYAGHNVVLEIQATIPS 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,067,618
Number of Sequences: 28952
Number of extensions: 294817
Number of successful extensions: 758
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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