Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0425
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.4  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.4  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 365  LCHMCYAT 342
            +CH+CYAT
Sbjct: 1012 ICHVCYAT 1019



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/8 (62%), Positives = 8/8 (100%)
 Frame = -1

Query: 365 LCHMCYAT 342
           +CH+CY+T
Sbjct: 925 ICHVCYST 932


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -1

Query: 365 LCHMCYAT 342
           +CH+CYAT
Sbjct: 293 ICHVCYAT 300


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 670 PDIPQGIVLNEISIN 626
           PD PQ +V+NE  I+
Sbjct: 268 PDPPQNLVINESIID 282


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 576 IHASHNRLVNRVV 614
           ++ SHN+L+N VV
Sbjct: 195 VNMSHNKLINLVV 207


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,721
Number of Sequences: 336
Number of extensions: 2989
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)