Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0425
         (683 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    25   2.9  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   5.1  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.0  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   9.0  

>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 569 IWH*NEHILCYFVSYAVRLCPCDLQIYKY 483
           IW    HILC ++ Y      C +QI  +
Sbjct: 32  IWTTVTHILCAYLCYIFSKFACKIQIQSF 60



 Score = 23.8 bits (49), Expect = 5.1
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
 Frame = +2

Query: 41  PDTQTKTYAYNKH----TKNIIIIETVTHVLWACL 133
           PD  + T    +H    T N II  TVTH+L A L
Sbjct: 10  PDLSSITSDLEEHEIFPTSNAIIWTTVTHILCAYL 44


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +1

Query: 391 LFI*QRKHIVVGRTSRAIVMNLRLF*IENVRYL 489
           L++ + KH+  G+    +++ L +  +ENV++L
Sbjct: 431 LWLREHKHLFQGKIYEPMILELNVPALENVQFL 463


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 88  IFSMFIVSISFCLRV 44
           IF+M +VSIS C+ V
Sbjct: 311 IFAMILVSISICVTV 325


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 88  IFSMFIVSISFCLRV 44
           IF+M +VSIS C+ V
Sbjct: 311 IFAMILVSISICVTV 325


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,991
Number of Sequences: 2352
Number of extensions: 11256
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)