Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0425
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    29   4.1  

>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44  DTQTKTYAYNKHTKNIII-IETVTHVLWACLPHNSTAWRTR 163
           DT       N HT   +  ++TV+  LW C P++S  W+ +
Sbjct: 242 DTNNTAGFMNLHTSRCLCQLDTVSKALWPCFPYSS--WKEK 280


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 44  DTQTKTYAYNKHTKNIII-IETVTHVLWACLPHNSTAWRTR 163
           DT       N HT   +  ++TV+  LW C P++S  W+ +
Sbjct: 204 DTNNTAGFMNLHTSRCLCQLDTVSKALWPCFPYSS--WKEK 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,794,285
Number of Sequences: 27780
Number of extensions: 259583
Number of successful extensions: 543
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)