Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0425
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 20  SASDRCGPDTQTKTYAYNKHTKNIIIIETVTH 115
           +AS    P T T T    KH K  ++ + + H
Sbjct: 383 TASPTTEPSTTTSTTISQKHIKVFVVNKDILH 414


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 88  IFSMFIVSISFCLRV 44
           IF+M +VSIS C+ V
Sbjct: 312 IFAMILVSISICVTV 326


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 88  IFSMFIVSISFCLRV 44
           IF+M +VSIS C+ V
Sbjct: 312 IFAMILVSISICVTV 326


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 548 ILCYFVSYAVRLCPCDL 498
           +LCY V++A+ L P D+
Sbjct: 703 LLCYLVTFALVLRPTDI 719


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +2

Query: 113 HVLWACLPHNSTAWRTRDYRLICSLIKYKDRFEISSTICRLISNLK 250
           ++    + + + A   R+Y  I ++I++K  +EIS+   R  +NLK
Sbjct: 240 YIFQEVIDYGNEAISKREYNGIGAVIEFKYSYEISNAF-RGNNNLK 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,030
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)