Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0424
         (740 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             257   8e-69
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   4.0  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 29   4.0  
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)                   28   6.9  
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 28   9.1  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  257 bits (629), Expect = 8e-69
 Identities = 121/204 (59%), Positives = 143/204 (70%)
 Frame = +1

Query: 16  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 195
           MGAY+Y++ELY+KK SD++RFLLRVR WQYRQLT +HRA RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 196 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 375
                             ATYGKP + GVN+LK  R+L+S+AEE            +SYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 376 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGLGKGHRY 555
           V QDS YKYFEVI+VDP HKAIRRD +INWI    HKHRE+RGLT+AG  +RG+ KGH Y
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARINWICKPTHKHRELRGLTAAGTKNRGMRKGHNY 180

Query: 556 SQTKGGSRRAAWLRRNTLQLRRKR 627
           ++  G SRRA W R NTL LRR R
Sbjct: 181 NKVIGSSRRANWKRHNTLSLRRYR 204


>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2735

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/73 (35%), Positives = 36/73 (49%)
 Frame = -3

Query: 651  LTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLAMLMYSI 472
            LT ++R L F T    + S   CPA   L L+V M L  +S + +    T+  A  + S+
Sbjct: 1488 LTPMERQLFFKTAHAHLNS--GCPA---LALQVLMELPASSLSESKTGSTSDEAPEVNSL 1542

Query: 471  HDPVDLRIATNGL 433
            HD  D  IAT  L
Sbjct: 1543 HDKTDDMIATGTL 1555


>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 543 LAETSGAATSRSQTTHLAMLMYSIHDPVDLRIA 445
           + ++SG AT +S    L + + S  DPVD+RIA
Sbjct: 203 IRKSSGNATHQSHNCCLDLRLMSSEDPVDVRIA 235


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 73  RFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 186
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 478 VHKHREMRGLTSAGRSSRGLGKGHRYSQTK 567
           +H  + ++GLT A  S   LG GH YS+ K
Sbjct: 61  MHFDKMIKGLTGAMASKAQLGLGHSYSRAK 90


>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 397  CMKNLVQPSKSSTHGDHRNDGQHAPQ-QWIEGCAWASTG*HHGSW 266
            C +    P ++S+H  +RN GQ A + Q     A A+ G  +G W
Sbjct: 883  CCRRWKSPGETSSHTVYRNKGQDAGEIQRTYTIAGANPGFQNGGW 927


>SB_6379| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 909

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 394 MKNLVQPSKSSTHGDHRNDGQHAPQQWIEGCAW 296
           ++NL  P +  T G     G + P+ W+ GCAW
Sbjct: 423 LQNLYIPPEGVT-GIPLGVGNYGPEAWLLGCAW 454


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 63  RCYAFFVA---CEGMA-VPSVDSYAPRSQAHKAGQSPKT-RLPC*TRLCCIQNPCA 215
           RCY   VA   C  ++  P +D+      A +    P T ++PC    C  QNPC+
Sbjct: 702 RCYDINVAGINCRIISHPPKIDTTGGMQMAQQLSYPPYTGQVPCLPSSCTPQNPCS 757


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,369,517
Number of Sequences: 59808
Number of extensions: 495826
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)