Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0424
         (740 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)           225   3e-59
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)           224   6e-59
At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloropla...    29   4.3  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   5.7  
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t...    27   9.9  
At4g18440.1 68417.m02736 adenylosuccinate lyase, putative / aden...    27   9.9  
At3g18050.1 68416.m02296 expressed protein                             27   9.9  

>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =  225 bits (549), Expect = 3e-59
 Identities = 109/205 (53%), Positives = 135/205 (65%), Gaps = 1/205 (0%)
 Frame = +1

Query: 16  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 195
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 196 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 375
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 376 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 552
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 553 YSQTKGGSRRAAWLRRNTLQLRRKR 627
             + +  SRRA W + N+L LRR R
Sbjct: 181 NHKNR-PSRRATWKKNNSLSLRRYR 204


>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =  224 bits (547), Expect = 6e-59
 Identities = 108/205 (52%), Positives = 135/205 (65%), Gaps = 1/205 (0%)
 Frame = +1

Query: 16  MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQXXX 195
           MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ   + R  RPTRPDKARRLGY+AKQ   
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 196 XXXXXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYW 375
                               YGKP + GV QLK  R+ +S+AEE            +SYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 376 VAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGRSSRGL-GKGHR 552
           + +DS+YKY+E+ILVDP+H A+R DP+INWI N VHKHRE+RGLTS G+ +RGL GKGH 
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHN 180

Query: 553 YSQTKGGSRRAAWLRRNTLQLRRKR 627
             + +  SRRA W + N++ LRR R
Sbjct: 181 NHKNR-PSRRATWKKNNSISLRRYR 204


>At5g54770.1 68418.m06822 thiazole biosynthetic enzyme, chloroplast
           (ARA6) (THI1) (THI4) identical to SP|Q38814 Thiazole
           biosynthetic enzyme, chloroplast precursor (ARA6)
           {Arabidopsis thaliana}
          Length = 349

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = -3

Query: 312 LKVARGLQLVDTMALGLAISGTLSNWTLAATTSHTDS--EYNITLFSTVA*SSGFVRPCG 139
           +K+   +   D +  G  + G ++NW L A   HT S  + N+     V  S G   P G
Sbjct: 179 VKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFG 238


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 370 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 471
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
           SP|Q9Y295 Developmentally regulated GTP-binding protein
           1 (DRG 1) {Homo sapiens}; contains Pfam profiles
           PF02824: TGS domain, PF01018: GTP1/OBG family
          Length = 369

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +1

Query: 91  RVWQYRQLTRMHRAPRPTRPD 153
           ++W+Y  LTR++  P+   PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305


>At4g18440.1 68417.m02736 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 536

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +2

Query: 512 RLVAAPEVSARDIDTLKQREAHAGQLGSDATLFN-YVANDKHLSKTVSDFPFAYFCMQME 688
           +LV + +V+A  +D +  R+     L + + L   Y +  K L+ ++S+F   YF + +E
Sbjct: 56  KLVTSTKVTA--MDGVSSRDLEMSNLTALSPLDGRYWSKVKDLASSLSEFGLIYFRVFVE 113

Query: 689 SQWVNKI 709
            +W+ K+
Sbjct: 114 IKWLLKL 120


>At3g18050.1 68416.m02296 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 154 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 35
           CP L AW   AY +T  +   S A +N+   S  + TTPE
Sbjct: 82  CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,435
Number of Sequences: 28952
Number of extensions: 322493
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)