Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0423
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.2  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.7  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   5.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   9.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.9  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    21   9.9  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    21   9.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = -3

Query: 300  EACKVFHICIRVHVLHCKTWPQCRQTPFE 214
            E+C  F++C+  H++     P     P E
Sbjct: 1216 ESCSSFYVCVNGHLVPQNCAPGLHYNPEE 1244


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 238 RPSFTVKYMHSNAN 279
           +P FT KY H N N
Sbjct: 57  QPGFTGKYCHENIN 70


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 82  SSPLPTTFLLMQTPFRMCGRHQNVRRY 2
           SSP P+  L   T   +    QN+RRY
Sbjct: 48  SSPTPSDKLNTSTTSSVNVNDQNIRRY 74


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 179 ECSSANPRLENSSKGVCRH 235
           ECS  +   +N SK + RH
Sbjct: 74  ECSKCSETQKNGSKKIMRH 92


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 143 SPSCRSDGVPTPECSSANPRLENSS 217
           SPS     +PT   S++NP   + S
Sbjct: 76  SPSSTPSSLPTQRTSTSNPTYSSRS 100


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 405 AVQNAAITEGEEKKDDK 455
           AVQ +++TEG+  K  K
Sbjct: 65  AVQGSSLTEGKRSKRSK 81


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 220 RSLSTLRPSFTVKYMH 267
           R + +LRP  T KY H
Sbjct: 281 RCIFSLRPGLTHKYTH 296


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 472 WIPM*RVSQTFGTTYSGM 525
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 472 WIPM*RVSQTFGTTYSGM 525
           W+ +  + Q  G  YSGM
Sbjct: 263 WVDLSHMMQQLGKAYSGM 280


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,063
Number of Sequences: 336
Number of extensions: 3484
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)