Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0423
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 95 4e-20
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 94 1e-19
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 76 2e-14
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 73 3e-13
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 60 2e-09
02_04_0344 - 22171401-22171448,22171725-22171760,22171996-221720... 51 1e-06
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 4.8
07_03_0546 - 19325526-19326054,19327109-19327631,19327898-193281... 28 8.4
06_03_0493 + 21402536-21404599 28 8.4
05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948 28 8.4
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 28 8.4
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 95.5 bits (227), Expect = 4e-20
Identities = 66/181 (36%), Positives = 89/181 (49%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 329
H + + +L PNVR+R+ LR +Q + +IE KF+ E A R IVN
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEERAALEAKYQKLYEPLYTKRYNIVN 106
Query: 330 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 509
G E D +E A +NAA EG+ D + KG+PDFW
Sbjct: 107 GVVEV----------DGGNDEP---ASENAA--EGK------------DADAKGVPDFWL 139
Query: 510 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 689
+ +LSE +QE DEP LK L+DIK +DP F L+F+F N +F N+VLTK Y
Sbjct: 140 TAMKTNEVLSEEIQERDEPALKYLKDIKWARIDDPKGFKLDFFFDTNPFFKNSVLTKTYH 199
Query: 690 M 692
M
Sbjct: 200 M 200
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 93.9 bits (223), Expect = 1e-19
Identities = 65/181 (35%), Positives = 86/181 (47%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 329
H + + SL P VR+R+ LR +Q + D+EAKF+ E A R IVN
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEERAALEAKYQKMYEPLYSKRYEIVN 105
Query: 330 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWY 509
G E D +E A T E+K++ KG+P+FW
Sbjct: 106 GVVEV----------DGVTKEA-------ADETPAEQKEE------------KGVPEFWL 136
Query: 510 NIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYL 689
N +N +LSE +QE DE LK L+DIK +P F LEFYF N +F N+VLTK Y
Sbjct: 137 NAMKNHEILSEEIQERDEEALKYLKDIKWYRISEPKGFKLEFYFDTNPFFKNSVLTKTYH 196
Query: 690 M 692
M
Sbjct: 197 M 197
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 76.2 bits (179), Expect = 2e-14
Identities = 37/81 (45%), Positives = 48/81 (59%)
Frame = +3
Query: 468 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAP 647
P+ KG+PDFW N +N +L+E + E DE LK L+DIK +DP F EF+F
Sbjct: 202 PLYSKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFYT 261
Query: 648 NEYFTNTVLTKEYLMKCKPDE 710
N +F N VLTK Y M + DE
Sbjct: 262 NPFFKNQVLTKTYHMIDEDDE 282
Score = 35.5 bits (78), Expect = 0.042
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 257
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 72.5 bits (170), Expect = 3e-13
Identities = 35/75 (46%), Positives = 45/75 (60%)
Frame = +3
Query: 486 KGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTN 665
KG+PDFW +N +L+E + E DE LK L+DIK +DP F EF+F N +F N
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKGFKFEFFFDTNPFFKN 162
Query: 666 TVLTKEYLMKCKPDE 710
VLTK Y M + DE
Sbjct: 163 QVLTKTYHMIDEDDE 177
Score = 41.5 bits (93), Expect = 6e-04
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Frame = +3
Query: 150 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 329
H + + SL P VR+R+ L +Q + ++EAKF E A R+ IV+
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSKRSEIVS 88
Query: 330 GTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD------PNVKG 491
G E + E + L N + E + D++A++ D + KG
Sbjct: 89 GVLEV-EGETEEREEKGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIKWCRIDDPKG 147
Query: 492 IP-DFWYN---IFRN--VSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNE 653
+F+++ F+N ++ M+ E DEPIL+ +++ H P
Sbjct: 148 FKFEFFFDTNPFFKNQVLTKTYHMIDEDDEPILEKAIGTEIEWH-------------PGN 194
Query: 654 YFTNTVLTKEYLMKCKP 704
T VLTKE KP
Sbjct: 195 CLTQEVLTKESSESTKP 211
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Frame = +3
Query: 483 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 659
+K IPDFW F + ML E++ E D+ I K L+ I V ED S +++ F+PN YF
Sbjct: 72 IKQIPDFWLTAFLSHPMLGELLTEDDQKIFKHLESIDVDDSEDIKSGYSITLTFSPNPYF 131
Query: 660 TNTVLTKEY 686
+T LTK Y
Sbjct: 132 EDTKLTKTY 140
>02_04_0344 -
22171401-22171448,22171725-22171760,22171996-22172056,
22173246-22173304,22173384-22173497,22173575-22173646,
22173786-22173836,22173935-22174057,22175154-22175291
Length = 233
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 483 VKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYF 659
++ IPDFW F + +LSE++ E D+ + K L+ + V +D S +++ F+ N YF
Sbjct: 77 IQTIPDFWLTAFLSHPLLSELLTEEDQKMFKYLESVDVDDSKDVKSGYSITLTFSENPYF 136
Query: 660 TNTVLTKEY 686
+ LTK Y
Sbjct: 137 EDKELTKTY 145
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 315 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 437
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>07_03_0546 -
19325526-19326054,19327109-19327631,19327898-19328152,
19328283-19328472,19328473-19328525,19329295-19329555,
19329670-19329720,19329873-19330121,19330225-19330453,
19332245-19332559
Length = 884
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = -1
Query: 491 TLYIGIHWRLNSLVILLFLTLSDGSILYRPS*LFFFSVI 375
T+ + + W++N +V+L FLTLS G L +FF SV+
Sbjct: 550 TIIMLLIWQINIIVVLCFLTLSLGLEL-----IFFSSVL 583
>06_03_0493 + 21402536-21404599
Length = 687
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/71 (22%), Positives = 36/71 (50%)
Frame = +3
Query: 39 NGVCIRRKVVGSGELAQHLLKSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQ 218
+G+C RKV + ++ + + K+GV NE++ T +H M N + + L ++
Sbjct: 371 DGLCKERKVAEAEDVLRMMEKAGVRANELL--YTTLIHGHFMNK---NSEKALGLLSEMK 425
Query: 219 KEFVDIEAKFY 251
+ ++++ Y
Sbjct: 426 NKGLELDISLY 436
>05_05_0163 + 22842955-22844371,22845519-22845592,22845913-22845948
Length = 508
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = -1
Query: 380 VITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYFTVKLGLNVD 228
V+ PW+++F I + +H+K +L K +K A + + +K G+ +D
Sbjct: 459 VLPPWLDSFPIPNAVLCLHSKINLSGKNNMKNETLA-DILVINIKTGILMD 508
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 324 VNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDF 503
VN + +DE + ++D E E+ Q + E+K DDK ++ +D V+ I F
Sbjct: 1951 VNLDQQQKEDEEIEKQKEDEEIEK-----QKEELQTDEQKHDDKRVDFIIDTQVESIDAF 2005
Query: 504 WYNIFRNV--SMLSEMMQEHD 560
+V ML++ + +H+
Sbjct: 2006 QAEQTDSVVTEMLNDEVTQHE 2026
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,614
Number of Sequences: 37544
Number of extensions: 385857
Number of successful extensions: 1096
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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