Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0423
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061) 29 2.8
SB_55463| Best HMM Match : OPA3 (HMM E-Value=0) 29 3.7
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 4.9
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 6.5
SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9) 28 6.5
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 8.6
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3) 28 8.6
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 130 bits (314), Expect = 1e-30
Identities = 78/184 (42%), Positives = 100/184 (54%), Gaps = 21/184 (11%)
Frame = +3
Query: 222 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPW----RDDTEE 389
E +E KFY EVHA R I +G EP D+EC P D+ EE
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEECRWPSDAEDEDEAEE 200
Query: 390 EELARAVQNAAIT-EGEEK---KDDKAIEPPMDP-NVKGIPDFWYNIFRNVSMLSEMMQE 554
+E A + + ++ E EEK D++ IE P + KGIP+FW +NV +LSEM+QE
Sbjct: 201 KEEKEATEVSKLSGEVEEKVKIDDEEKIETEQLPEDTKGIPEFWLTAMKNVELLSEMIQE 260
Query: 555 HDEPILKCLQDIKV------------QMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMKC 698
HDEPILK L D++V P+ F LEF+F PN +FTNTVLTK Y MKC
Sbjct: 261 HDEPILKHLHDVRVIFTGPESTNTTQYPQPTPMGFVLEFHFTPNPFFTNTVLTKSYKMKC 320
Query: 699 KPDE 710
+PDE
Sbjct: 321 EPDE 324
>SB_7420| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
Length = 1354
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 453 KAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDE 563
+ I+PP+ P K +PD ++ R + LS + EH+E
Sbjct: 156 RKIKPPVPPKPKVMPDRAASLSRQSASLSRRIPEHNE 192
>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
Length = 387
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 369 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG-IPDFWYNIFRNVSMLSEM 545
+R ++EE A QN+ I + + D I N+KG + D W I + S L +
Sbjct: 215 YRRSAKKEEQKEAAQNSKILALQSQVSDLGIAMEAGLNIKGEVTDGWNEIKKAASGLRYI 274
Query: 546 MQEHDE 563
+ + DE
Sbjct: 275 IFKMDE 280
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 423 ITEGEEKKDDKA-IEPPMDPNV--KGIPDFWYNIFRN 524
+TE +E+K+DKA IE P + + ++YN FRN
Sbjct: 371 VTENKEEKEDKAKIEDSQTPEIFSHSLDLYFYNEFRN 407
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 333 TYEPNDDECLNPWRDDTEEEEL 398
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_31250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = +3
Query: 468 PMDPNVKGIPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKV---QMHEDPISFTLEF- 635
P DP+ K I W N+F M + +++ + +CL + + Q H +P + + +
Sbjct: 110 PSDPSAKMILQPWRNVFSKGFMDAFVLRSIFPKLSQCLAEFVINPHQQHLEPFHWVMSWK 169
Query: 636 YFAPNEYFTNTVLTKEYLMK 695
P ++F ++L K + K
Sbjct: 170 EIIPLQHFV-SLLDKHFFPK 188
>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 238
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 369 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP-DFWYNIFRNVSMLSEM 545
W+ E R ++NA + + K+ KA++P +D + P Y + + +EM
Sbjct: 38 WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEPMQQLYLQQQQIKTAAEM 97
Query: 546 MQEH 557
+ H
Sbjct: 98 EKNH 101
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 336 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 431
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
Length = 477
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 395 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 255
LFF +T +F + FI + F K + F++ F CMYF
Sbjct: 13 LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,601,640
Number of Sequences: 59808
Number of extensions: 457775
Number of successful extensions: 1292
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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