Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0423
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...   111   4e-25
Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical pr...    58   5e-09
AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of...    58   5e-09
U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical pr...    30   1.4  
L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score =  111 bits (268), Expect = 4e-25
 Identities = 65/184 (35%), Positives = 91/184 (49%)
 Frame = +3

Query: 156 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 335
           + + +LP NV++R+ AL+ LQ + + IE+ FY  VH                R  IV G 
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76

Query: 336 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 515
            EP  ++   P  +  E ++LA                 KA E   DP+ KGI DFW   
Sbjct: 77  VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120

Query: 516 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMK 695
            R   +++E ++EHD PIL  L D+     +DP  F +EF+FA N YF N VLTK YL+ 
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKNQVLTKTYLLG 180

Query: 696 CKPD 707
             PD
Sbjct: 181 FDPD 184


>Z54236-2|CAE46661.1|  313|Caenorhabditis elegans Hypothetical
           protein C27B7.1b protein.
          Length = 313

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 492 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 668
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 669 VLTKEY 686
           V+TK Y
Sbjct: 137 VITKSY 142


>Z54236-1|CAA90979.2|  312|Caenorhabditis elegans Hypothetical
           protein C27B7.1a protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 492 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 668
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 669 VLTKEY 686
           V+TK Y
Sbjct: 137 VITKSY 142


>AF321546-1|AAG42102.1|  312|Caenorhabditis elegans suppressor of
           presenilin 2 protein.
          Length = 312

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +3

Query: 492 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 668
           I +FW   F N  +LS  + E  E +L  L+D++VQ  ED  S F +   F PNEYFTN 
Sbjct: 77  IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136

Query: 669 VLTKEY 686
           V+TK Y
Sbjct: 137 VITKSY 142


>U50069-2|AAB37558.1|  328|Caenorhabditis elegans Hypothetical
           protein C09B9.2 protein.
          Length = 328

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -2

Query: 697 HFIKYSLVSTVFVKYSFGAK*NSKVKLMGSSCICTLISCKHF 572
           HF+   L+ + F++ SF +K     ++ G S + ++ +C HF
Sbjct: 134 HFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHF 175


>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 269 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 180
           EC++ + K GLNVDK+L        +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
            protein W09B6.1a protein.
          Length = 2054

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +3

Query: 384  EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 554
            +EE+     QNA +   T  E++     +   +  N + +P     IF  V +  + +  
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158

Query: 555  HDEPILKCLQDIKVQMHEDPIS 620
            +  P+L  L  ++V  H+DP S
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDPTS 1180


>Z81123-2|CAB03365.1|  734|Caenorhabditis elegans Hypothetical
           protein T14D7.2 protein.
          Length = 734

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -1

Query: 392 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 222
           + F +I P V T++++ F    + +  LFI   V+  I   FA  C   +    LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706

Query: 221 LLKS 210
           LL S
Sbjct: 707 LLAS 710


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 363 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 476
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,328
Number of Sequences: 27780
Number of extensions: 337566
Number of successful extensions: 1133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)